Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c113' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9654011-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.6 PID: 40194 Logging PID: 40196 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9654011, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '0b711774880dad5e206009c4418c3be928928328', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/setuptools-80.9.0:custom:isolated/gromacs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2025.3-2', 'project_dirname': 'setuptools-80.9.0:custom:isolated', 'project_name': 'setuptools-80.9.0', 'project_owner': 'churchyard', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/setuptools-80.9.0/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/churchyard/setuptools-80.9.0:custom:isolated/fedora-rawhide-x86_64/', 'id': 'copr_coprdir', 'name': 'Coprdir repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/f44-build/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch'}], 'sandbox': 'churchyard/setuptools-80.9.0--churchyard', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'churchyard', 'tags': [], 'task_id': '9654011-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/churchyard/setuptools-80.9.0:custom:isolated/gromacs /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/churchyard/setuptools-80.9.0:custom:isolated/gromacs', '/var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs'... Running: git checkout 0b711774880dad5e206009c4418c3be928928328 -- cmd: ['git', 'checkout', '0b711774880dad5e206009c4418c3be928928328', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs rc: 0 stdout: stderr: Note: switching to '0b711774880dad5e206009c4418c3be928928328'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0b71177 automatic import of gromacs Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading gromacs-2025.3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o gromacs-2025.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/setuptools-80.9.0:custom:isolated/gromacs/gromacs-2025.3.tar.gz/md5/5a2315b6f6e13b091bbbbfddee9eb62b/gromacs-2025.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 42.3M 100 42.3M 0 0 25.7M 0 0:00:01 0:00:01 --:--:-- 25.8M INFO: Reading stdout from command: md5sum gromacs-2025.3.tar.gz INFO: Downloading manual-2025.3.pdf INFO: Calling: curl -H Pragma: -o manual-2025.3.pdf --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/setuptools-80.9.0:custom:isolated/gromacs/manual-2025.3.pdf/md5/534ce30723b6a993b81c07ef95bf4976/manual-2025.3.pdf % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 13.1M 100 13.1M 0 0 24.7M 0 --:--:-- --:--:-- --:--:-- 24.7M INFO: Reading stdout from command: md5sum manual-2025.3.pdf INFO: Downloading regressiontests-2025.3.tar.gz INFO: Calling: curl -H Pragma: -o regressiontests-2025.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/churchyard/setuptools-80.9.0:custom:isolated/gromacs/regressiontests-2025.3.tar.gz/md5/02b04b7c0c5dd7583a984b862d244d17/regressiontests-2025.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 31.1M 100 31.1M 0 0 24.1M 0 0:00:01 0:00:01 --:--:-- 24.1M INFO: Reading stdout from command: md5sum regressiontests-2025.3.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1759859794.140731 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.3 starting (python version = 3.13.7, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1759859794.140731 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs/gromacs.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1759859794.140731/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-3256eab4-bc89-4c17-be08-55e2234dfa06 INFO: Checking that 28e0af93e676d22555d5249ba644149cac5818d6cfa18d6e38e7613a36536194 image matches host's architecture INFO: Copy content of container 28e0af93e676d22555d5249ba644149cac5818d6cfa18d6e38e7613a36536194 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1759859794.140731/root INFO: mounting 28e0af93e676d22555d5249ba644149cac5818d6cfa18d6e38e7613a36536194 with podman image mount INFO: image 28e0af93e676d22555d5249ba644149cac5818d6cfa18d6e38e7613a36536194 as /var/lib/containers/storage/overlay/38801bbcb602df7f4f66ec64d423a1c11ef7d4c1b62e859f25b54dbbe408a634/merged INFO: umounting image 28e0af93e676d22555d5249ba644149cac5818d6cfa18d6e38e7613a36536194 (/var/lib/containers/storage/overlay/38801bbcb602df7f4f66ec64d423a1c11ef7d4c1b62e859f25b54dbbe408a634/merged) with podman image umount INFO: Removing image mock-bootstrap-3256eab4-bc89-4c17-be08-55e2234dfa06 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1759859794.140731/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 35.5 KiB/s | 3.8 KiB | 00m00s Coprdir repository 100% | 14.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 14.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 175.9 KiB/s | 25.9 KiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 1.0 MiB gzip x86_64 1.14-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 397.8 KiB info x86_64 7.2-6.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 353.9 KiB patch x86_64 2.8-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 222.8 KiB redhat-rpm-config noarch 343-14.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 183.3 KiB rpm-build x86_64 6.0.0-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 287.4 KiB sed x86_64 4.9-5.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 3.9 MiB tar x86_64 2:1.35-6.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 2.9 MiB unzip x86_64 6.0-68.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 390.3 KiB util-linux x86_64 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http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-2.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 2.7 MiB coreutils-common x86_64 9.8-3.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 11.1 MiB crypto-policies noarch 20250714-5.gitcd6043a.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 146.9 KiB curl x86_64 8.16.0-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 475.3 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 2.3 MiB debugedit x86_64 5.2-3.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 214.0 KiB dwz x86_64 0.16-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 287.1 KiB ed x86_64 1.22.2-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 148.1 KiB efi-srpm-macros noarch 6-4.fc43 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| 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-50.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1759859794.140731/root/var/cache/d [ 2/179] Prepare transaction 100% | 1.2 KiB/s | 177.0 B | 00m00s [ 3/179] Installing libgcc-0:15.2.1-2. 100% | 87.3 MiB/s | 268.3 KiB | 00m00s [ 4/179] Installing publicsuffix-list- 100% | 68.2 MiB/s | 69.8 KiB | 00m00s [ 5/179] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0 B | 00m00s [ 6/179] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 7/179] Installing fedora-gpg-keys-0: 100% | 14.6 MiB/s | 179.0 KiB | 00m00s [ 8/179] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/179] Installing fedora-repos-0:44- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 10/179] Installing fedora-release-com 100% | 8.1 MiB/s | 24.9 KiB | 00m00s [ 11/179] Installing fedora-release-0:4 100% | 6.7 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/179] Installing setup-0:2.15.0-26. 100% | 32.4 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/179] Installing filesystem-0:3.18- 100% | 1.1 MiB/s | 212.8 KiB | 00m00s [ 14/179] Installing gnulib-l10n-0:2024 100% | 71.8 MiB/s | 661.9 KiB | 00m00s [ 15/179] Installing coreutils-common-0 100% | 183.2 MiB/s | 11.2 MiB | 00m00s [ 16/179] Installing pcre2-syntax-0:10. 100% | 90.4 MiB/s | 277.8 KiB | 00m00s [ 17/179] Installing ncurses-base-0:6.5 100% | 28.8 MiB/s | 353.5 KiB | 00m00s [ 18/179] Installing bash-0:5.3.0-2.fc4 100% | 159.1 MiB/s | 8.4 MiB | 00m00s [ 19/179] Installing glibc-common-0:2.4 100% | 40.8 MiB/s | 1.0 MiB | 00m00s [ 20/179] Installing glibc-gconv-extra- 100% | 112.5 MiB/s | 7.3 MiB | 00m00s [ 21/179] Installing glibc-0:2.42.9000- 100% | 113.5 MiB/s | 6.7 MiB | 00m00s [ 22/179] Installing ncurses-libs-0:6.5 100% | 132.9 MiB/s | 952.8 KiB | 00m00s [ 23/179] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 24/179] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 25/179] Installing bzip2-libs-0:1.0.8 100% | 79.8 MiB/s | 81.7 KiB | 00m00s [ 26/179] Installing libgpg-error-0:1.5 100% | 40.9 MiB/s | 921.1 KiB | 00m00s [ 27/179] Installing libstdc++-0:15.2.1 100% | 203.1 MiB/s | 2.8 MiB | 00m00s [ 28/179] Installing libassuan-0:2.5.7- 100% | 80.9 MiB/s | 165.6 KiB | 00m00s [ 29/179] Installing libgcrypt-0:1.11.1 100% | 225.0 MiB/s | 1.6 MiB | 00m00s [ 30/179] Installing readline-0:8.3-2.f 100% | 167.3 MiB/s | 513.9 KiB | 00m00s [ 31/179] Installing xz-libs-1:5.8.1-2. 100% | 106.9 MiB/s | 218.9 KiB | 00m00s [ 32/179] Installing libuuid-0:2.41.1-1 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [ 33/179] Installing gmp-1:6.3.0-4.fc44 100% | 159.7 MiB/s | 817.5 KiB | 00m00s [ 34/179] Installing popt-0:1.19-9.fc43 100% | 22.7 MiB/s | 139.4 KiB | 00m00s [ 35/179] Installing libzstd-0:1.5.7-3. 100% | 183.9 MiB/s | 941.6 KiB | 00m00s [ 36/179] Installing elfutils-libelf-0: 100% | 194.4 MiB/s | 1.2 MiB | 00m00s [ 37/179] Installing npth-0:1.8-3.fc43. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [ 38/179] Installing libblkid-0:2.41.1- 100% | 128.7 MiB/s | 263.5 KiB | 00m00s [ 39/179] Installing libxcrypt-0:4.4.38 100% | 93.5 MiB/s | 287.1 KiB | 00m00s [ 40/179] Installing libsepol-0:3.9-2.f 100% | 200.9 MiB/s | 822.9 KiB | 00m00s [ 41/179] Installing sqlite-libs-0:3.50 100% | 189.6 MiB/s | 1.5 MiB | 00m00s [ 42/179] Installing gnupg2-gpgconf-0:2 100% | 14.5 MiB/s | 252.1 KiB | 00m00s [ 43/179] Installing libattr-0:2.5.2-6. 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [ 44/179] Installing libacl-0:2.3.2-4.f 100% | 35.9 MiB/s | 36.8 KiB | 00m00s [ 45/179] Installing pcre2-0:10.46-1.fc 100% | 170.7 MiB/s | 699.1 KiB | 00m00s [ 46/179] Installing libselinux-0:3.9-5 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 47/179] Installing grep-0:3.12-2.fc43 100% | 40.1 MiB/s | 1.0 MiB | 00m00s [ 48/179] Installing sed-0:4.9-5.fc43.x 100% | 35.2 MiB/s | 865.5 KiB | 00m00s [ 49/179] Installing findutils-1:4.10.0 100% | 64.1 MiB/s | 1.9 MiB | 00m00s [ 50/179] Installing libtasn1-0:4.20.0- 100% | 87.0 MiB/s | 178.1 KiB | 00m00s [ 51/179] Installing libunistring-0:1.1 100% | 191.9 MiB/s | 1.7 MiB | 00m00s [ 52/179] Installing libidn2-0:2.3.8-2. 100% | 18.2 MiB/s | 558.7 KiB | 00m00s [ 53/179] Installing crypto-policies-0: 100% | 10.5 MiB/s | 172.0 KiB | 00m00s [ 54/179] Installing xz-1:5.8.1-2.fc43. 100% | 40.3 MiB/s | 1.3 MiB | 00m00s [ 55/179] Installing libmount-0:2.41.1- 100% | 121.7 MiB/s | 373.8 KiB | 00m00s [ 56/179] Installing gnupg2-verify-0:2. 100% | 19.0 MiB/s | 349.7 KiB | 00m00s [ 57/179] Installing dwz-0:0.16-2.fc43. 100% | 16.6 MiB/s | 288.5 KiB | 00m00s [ 58/179] Installing mpfr-0:4.2.2-2.fc4 100% | 135.8 MiB/s | 834.4 KiB | 00m00s [ 59/179] Installing gawk-0:5.3.2-2.fc4 100% | 60.5 MiB/s | 1.8 MiB | 00m00s [ 60/179] Installing libksba-0:1.6.7-4. 100% | 97.9 MiB/s | 401.1 KiB | 00m00s [ 61/179] Installing unzip-0:6.0-68.fc4 100% | 20.2 MiB/s | 393.8 KiB | 00m00s [ 62/179] Installing file-libs-0:5.46-8 100% | 338.8 MiB/s | 11.9 MiB | 00m00s [ 63/179] Installing file-0:5.46-8.fc44 100% | 5.8 MiB/s | 101.7 KiB | 00m00s [ 64/179] Installing diffutils-0:3.12-3 100% | 57.8 MiB/s | 1.6 MiB | 00m00s [ 65/179] Installing libcap-ng-0:0.8.5- 100% | 34.6 MiB/s | 70.8 KiB | 00m00s [ 66/179] Installing audit-libs-0:4.1.2 100% | 93.1 MiB/s | 381.5 KiB | 00m00s [ 67/179] Installing libsemanage-0:3.9- 100% | 101.0 MiB/s | 310.2 KiB | 00m00s [ 68/179] Installing libsmartcols-0:2.4 100% | 88.7 MiB/s | 181.6 KiB | 00m00s [ 69/179] Installing libeconf-0:0.7.9-2 100% | 32.5 MiB/s | 66.5 KiB | 00m00s [ 70/179] Installing pam-libs-0:1.7.1-3 100% | 42.0 MiB/s | 129.0 KiB | 00m00s [ 71/179] Installing libcap-0:2.76-3.fc 100% | 10.5 MiB/s | 214.3 KiB | 00m00s [ 72/179] Installing systemd-libs-0:258 100% | 178.8 MiB/s | 2.3 MiB | 00m00s [ 73/179] Installing alternatives-0:1.3 100% | 3.9 MiB/s | 63.8 KiB | 00m00s [ 74/179] Installing lua-libs-0:5.4.8-2 100% | 137.6 MiB/s | 281.9 KiB | 00m00s [ 75/179] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 76/179] Installing libffi-0:3.5.2-1.f 100% | 41.6 MiB/s | 85.2 KiB | 00m00s [ 77/179] Installing p11-kit-0:0.25.8-1 100% | 65.4 MiB/s | 2.3 MiB | 00m00s [ 78/179] Installing p11-kit-trust-0:0. 100% | 11.8 MiB/s | 448.3 KiB | 00m00s [ 79/179] Installing openssl-libs-1:3.5 100% | 219.5 MiB/s | 9.2 MiB | 00m00s [ 80/179] Installing coreutils-0:9.8-3. 100% | 78.2 MiB/s | 5.5 MiB | 00m00s [ 81/179] Installing ca-certificates-0: 100% | 1.1 MiB/s | 2.5 MiB | 00m02s [ 82/179] Installing gzip-0:1.14-1.fc44 100% | 18.8 MiB/s | 403.3 KiB | 00m00s [ 83/179] Installing rpm-sequoia-0:1.9. 100% | 206.5 MiB/s | 2.5 MiB | 00m00s [ 84/179] Installing libfsverity-0:1.6- 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 85/179] Installing libevent-0:2.1.12- 100% | 144.3 MiB/s | 886.8 KiB | 00m00s [ 86/179] Installing util-linux-core-0: 100% | 49.3 MiB/s | 1.5 MiB | 00m00s [ 87/179] Installing libusb1-0:1.0.29-4 100% | 8.9 MiB/s | 172.9 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 88/179] Installing tpm2-tss-0:4.1.3-8 100% | 120.9 MiB/s | 1.6 MiB | 00m00s [ 89/179] Installing gnupg2-gpg-agent-0 100% | 17.8 MiB/s | 675.4 KiB | 00m00s [ 90/179] Installing ima-evm-utils-libs 100% | 30.3 MiB/s | 62.0 KiB | 00m00s [ 91/179] Installing systemd-standalone 100% | 16.0 MiB/s | 294.1 KiB | 00m00s [ 92/179] Installing rpm-libs-0:6.0.0-1 100% | 152.2 MiB/s | 935.3 KiB | 00m00s [ 93/179] Installing zip-0:3.0-44.fc43. 100% | 34.1 MiB/s | 698.4 KiB | 00m00s [ 94/179] Installing gnupg2-keyboxd-0:2 100% | 12.4 MiB/s | 202.7 KiB | 00m00s [ 95/179] Installing libpsl-0:0.21.5-6. 100% | 37.9 MiB/s | 77.5 KiB | 00m00s [ 96/179] Installing tar-2:1.35-6.fc43. 100% | 82.2 MiB/s | 3.0 MiB | 00m00s [ 97/179] Installing linkdupes-0:0.7.2- 100% | 41.0 MiB/s | 840.1 KiB | 00m00s [ 98/179] Installing libselinux-utils-0 100% | 13.2 MiB/s | 323.4 KiB | 00m00s [ 99/179] Installing liblastlog2-0:2.41 100% | 2.3 MiB/s | 35.9 KiB | 00m00s [100/179] Installing libfdisk-0:2.41.1- 100% | 74.5 MiB/s | 381.4 KiB | 00m00s [101/179] Installing util-linux-0:2.41. 100% | 45.2 MiB/s | 3.6 MiB | 00m00s [102/179] Installing policycoreutils-0: 100% | 11.8 MiB/s | 711.8 KiB | 00m00s [103/179] Installing selinux-policy-0:4 100% | 632.1 KiB/s | 33.5 KiB | 00m00s [104/179] Installing selinux-policy-tar 100% | 62.9 MiB/s | 14.9 MiB | 00m00s [105/179] Installing zstd-0:1.5.7-3.fc4 100% | 23.7 MiB/s | 509.8 KiB | 00m00s [106/179] Installing nettle-0:3.10.1-2. 100% | 155.0 MiB/s | 793.7 KiB | 00m00s [107/179] Installing gnutls-0:3.8.10-5. 100% | 202.3 MiB/s | 3.8 MiB | 00m00s [108/179] Installing libxml2-0:2.12.10- 100% | 74.1 MiB/s | 1.7 MiB | 00m00s [109/179] Installing bzip2-0:1.0.8-21.f 100% | 5.7 MiB/s | 99.8 KiB | 00m00s [110/179] Installing add-determinism-0: 100% | 96.0 MiB/s | 2.3 MiB | 00m00s [111/179] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [112/179] Installing cpio-0:2.15-6.fc43 100% | 44.0 MiB/s | 1.1 MiB | 00m00s [113/179] Installing libpkgconf-0:2.3.0 100% | 38.7 MiB/s | 79.2 KiB | 00m00s [114/179] Installing pkgconf-0:2.3.0-3. 100% | 5.2 MiB/s | 91.0 KiB | 00m00s [115/179] Installing ed-0:1.22.2-1.fc44 100% | 8.6 MiB/s | 150.4 KiB | 00m00s [116/179] Installing patch-0:2.8-2.fc43 100% | 12.9 MiB/s | 224.3 KiB | 00m00s [117/179] Installing lz4-libs-0:1.10.0- 100% | 79.3 MiB/s | 162.5 KiB | 00m00s [118/179] Installing libarchive-0:3.8.1 100% | 155.1 MiB/s | 953.1 KiB | 00m00s [119/179] Installing jansson-0:2.14-3.f 100% | 44.2 MiB/s | 90.5 KiB | 00m00s [120/179] Installing libgomp-0:15.2.1-2 100% | 176.6 MiB/s | 542.5 KiB | 00m00s [121/179] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [122/179] Installing gdbm-libs-1:1.23-1 100% | 64.2 MiB/s | 131.6 KiB | 00m00s [123/179] Installing cyrus-sasl-lib-0:2 100% | 82.1 MiB/s | 2.3 MiB | 00m00s [124/179] Installing openldap-0:2.6.10- 100% | 108.0 MiB/s | 663.6 KiB | 00m00s [125/179] Installing gnupg2-dirmngr-0:2 100% | 17.3 MiB/s | 621.1 KiB | 00m00s [126/179] Installing gnupg2-0:2.4.8-4.f 100% | 122.0 MiB/s | 6.5 MiB | 00m00s [127/179] Installing rpm-sign-libs-0:6. 100% | 19.8 MiB/s | 40.6 KiB | 00m00s [128/179] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [129/179] Installing xxhash-libs-0:0.8. 100% | 44.7 MiB/s | 91.6 KiB | 00m00s [130/179] Installing libbrotli-0:1.1.0- 100% | 136.0 MiB/s | 835.6 KiB | 00m00s [131/179] Installing libnghttp2-0:1.67. 100% | 79.8 MiB/s | 163.4 KiB | 00m00s [132/179] Installing keyutils-libs-0:1. 100% | 27.2 MiB/s | 55.7 KiB | 00m00s [133/179] Installing libcom_err-0:1.47. 100% | 62.7 MiB/s | 64.2 KiB | 00m00s [134/179] Installing libverto-0:0.3.2-1 100% | 13.3 MiB/s | 27.2 KiB | 00m00s [135/179] Installing krb5-libs-0:1.21.3 100% | 143.7 MiB/s | 2.3 MiB | 00m00s [136/179] Installing libssh-0:0.11.3-1. 100% | 111.2 MiB/s | 569.2 KiB | 00m00s [137/179] Installing libcurl-0:8.16.0-1 100% | 149.8 MiB/s | 920.6 KiB | 00m00s [138/179] Installing curl-0:8.16.0-1.fc 100% | 12.0 MiB/s | 478.1 KiB | 00m00s [139/179] Installing rpm-0:6.0.0-1.fc44 100% | 35.8 MiB/s | 2.6 MiB | 00m00s [140/179] Installing efi-srpm-macros-0: 100% | 20.1 MiB/s | 41.1 KiB | 00m00s [141/179] Installing java-srpm-macros-0 100% | 1.1 MiB/s | 1.1 KiB | 00m00s [142/179] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [143/179] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [144/179] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [145/179] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [146/179] Installing elfutils-default-y 100% | 145.9 KiB/s | 2.0 KiB | 00m00s [147/179] Installing elfutils-libs-0:0. 100% | 111.5 MiB/s | 685.2 KiB | 00m00s [148/179] Installing elfutils-debuginfo 100% | 4.4 MiB/s | 86.2 KiB | 00m00s [149/179] Installing binutils-0:2.45.50 100% | 172.8 MiB/s | 27.1 MiB | 00m00s [150/179] Installing elfutils-0:0.193-3 100% | 94.1 MiB/s | 2.9 MiB | 00m00s [151/179] Installing gdb-minimal-0:16.3 100% | 213.8 MiB/s | 13.3 MiB | 00m00s [152/179] Installing debugedit-0:5.2-3. 100% | 15.2 MiB/s | 217.3 KiB | 00m00s [153/179] Installing rpm-build-libs-0:6 100% | 131.5 MiB/s | 269.2 KiB | 00m00s [154/179] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [155/179] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [156/179] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [157/179] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [158/179] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [159/179] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [160/179] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [161/179] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [162/179] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [163/179] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [164/179] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [165/179] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [166/179] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [167/179] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [168/179] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [169/179] Installing rpm-build-0:6.0.0- 100% | 17.0 MiB/s | 296.5 KiB | 00m00s [170/179] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [171/179] Installing redhat-rpm-config- 100% | 46.3 MiB/s | 189.5 KiB | 00m00s [172/179] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [173/179] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [174/179] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [175/179] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [176/179] Installing rpm-plugin-selinux 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [177/179] Installing which-0:2.23-3.fc4 100% | 6.0 MiB/s | 85.7 KiB | 00m00s [178/179] Installing shadow-utils-2:4.1 100% | 69.6 MiB/s | 4.0 MiB | 00m00s [179/179] Installing info-0:7.2-6.fc43. 100% | 34.8 KiB/s | 354.3 KiB | 00m10s Warning: skipped OpenPGP checks for 177 packages from repositories: copr_coprdir, http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.7.2-2.fc44.x86_64 alternatives-1.33-2.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.2-2.fc44.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45.50-5.fc44.x86_64 build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch coreutils-9.8-3.fc44.x86_64 coreutils-common-9.8-3.fc44.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-5.gitcd6043a.fc44.noarch curl-8.16.0-1.fc44.x86_64 cyrus-sasl-lib-2.1.28-33.fc44.x86_64 debugedit-5.2-3.fc44.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc44.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.193-3.fc43.x86_64 elfutils-debuginfod-client-0.193-3.fc43.x86_64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.x86_64 elfutils-libs-0.193-3.fc43.x86_64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.4.noarch fedora-release-common-44-0.4.noarch fedora-release-identity-basic-44-0.4.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-8.fc44.x86_64 file-libs-5.46-8.fc44.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-5.0.0-1.fc44.noarch forge-srpm-macros-0.4.0-3.fc44.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc44.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-6.fc44.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-5.fc44.x86_64 glibc-common-2.42.9000-5.fc44.x86_64 glibc-gconv-extra-2.42.9000-5.fc44.x86_64 glibc-minimal-langpack-2.42.9000-5.fc44.x86_64 gmp-6.3.0-4.fc44.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnulib-l10n-20241231-1.fc44.noarch gnupg2-2.4.8-4.fc44.x86_64 gnupg2-dirmngr-2.4.8-4.fc44.x86_64 gnupg2-gpg-agent-2.4.8-4.fc44.x86_64 gnupg2-gpgconf-2.4.8-4.fc44.x86_64 gnupg2-keyboxd-2.4.8-4.fc44.x86_64 gnupg2-verify-2.4.8-4.fc44.x86_64 gnutls-3.8.10-5.fc44.x86_64 go-srpm-macros-3.8.0-1.fc44.noarch gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.14-1.fc44.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-8.fc44.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.1-3.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.1-17.fc44.x86_64 libbrotli-1.1.0-10.fc44.x86_64 libcap-2.76-3.fc44.x86_64 libcap-ng-0.8.5-8.fc44.x86_64 libcom_err-1.47.3-2.fc44.x86_64 libcurl-8.16.0-1.fc44.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.1-17.fc44.x86_64 libffi-3.5.2-1.fc44.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-2.fc44.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-2.fc44.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.1-17.fc44.x86_64 libmount-2.41.1-17.fc44.x86_64 libnghttp2-1.67.1-1.fc44.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-5.fc44.x86_64 libselinux-utils-3.9-5.fc44.x86_64 libsemanage-3.9-4.fc44.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.1-17.fc44.x86_64 libssh-0.11.3-1.fc44.x86_64 libssh-config-0.11.3-1.fc44.noarch libstdc++-15.2.1-2.fc44.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc44.x86_64 libuuid-2.41.1-17.fc44.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-9.fc44.x86_64 libxml2-2.12.10-5.fc44.x86_64 libzstd-1.5.7-3.fc44.x86_64 linkdupes-0.7.2-2.fc44.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.x86_64 openssl-libs-3.5.1-3.fc44.x86_64 p11-kit-0.25.8-1.fc44.x86_64 p11-kit-trust-0.25.8-1.fc44.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.46-1.fc44.x86_64 pcre2-syntax-10.46-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 policycoreutils-3.9-5.fc44.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.4-1.fc44.noarch python-srpm-macros-3.14-8.fc44.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.10.0~rc-1.fc44.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-14.fc44.noarch rpm-6.0.0-1.fc44.x86_64 rpm-build-6.0.0-1.fc44.x86_64 rpm-build-libs-6.0.0-1.fc44.x86_64 rpm-libs-6.0.0-1.fc44.x86_64 rpm-plugin-selinux-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-6.0.0-1.fc44.x86_64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-5.fc43.x86_64 selinux-policy-42.12-1.fc44.noarch selinux-policy-targeted-42.12-1.fc44.noarch setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.4-1.fc44.x86_64 systemd-libs-258-1.fc44.x86_64 systemd-standalone-sysusers-258-1.fc44.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.x86_64 util-linux-2.41.1-17.fc44.x86_64 util-linux-core-2.41.1-17.fc44.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-2.fc44.x86_64 zstd-1.5.7-3.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1758240000 Wrote: /builddir/build/SRPMS/gromacs-2025.3-2.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1759859794.140731/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ii888amk/gromacs/gromacs.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2025.3-2.fc44.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1759859794.140731/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1759859794.140731/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1759859794.140731/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Finish: chroot init Start: build phase for gromacs-2025.3-2.fc44.src.rpm Start: build setup for gromacs-2025.3-2.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1758240000 Wrote: /builddir/build/SRPMS/gromacs-2025.3-2.fc44.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 37.9 KiB/s | 3.8 KiB | 00m00s Coprdir repository 100% | 15.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 15.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 183.3 KiB/s | 25.9 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: cmake x86_64 3.31.6-4.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 34.5 MiB fftw-devel x86_64 3.3.10-16.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 284.2 KiB flexiblas-devel x86_64 3.4.5-5.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 4.9 MiB gcc-c++ x86_64 15.2.1-2.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 41.4 MiB gsl-devel x86_64 2.8-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 1.6 MiB hwloc x86_64 2.12.0-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 586.4 KiB hwloc-devel x86_64 2.12.0-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 665.3 KiB lmfit-devel x86_64 10.0-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 92.6 KiB mpich-devel x86_64 4.2.2-6.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 2.0 MiB muParser-devel 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http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 4.9 MiB tcl x86_64 1:9.0.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 4.3 MiB tcsh x86_64 6.24.14-4.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 1.2 MiB tng x86_64 1.8.2-21.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 344.5 KiB tzdata noarch 2025b-3.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 1.6 MiB ucx x86_64 1.18.1-2.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 2.4 MiB vim-filesystem noarch 2:9.1.1818-1.fc44 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 40.0 B yaksa x86_64 0.3-8.fc43 http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch 43.8 MiB Transaction Summary: Installing: 173 packages Total size of inbound packages is 190 MiB. 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00m00s [ 34/175] Installing flexiblas-openblas 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 35/175] Installing flexiblas-netlib-0 100% | 160.6 MiB/s | 10.9 MiB | 00m00s [ 36/175] Installing flexiblas-0:3.4.5- 100% | 50.4 MiB/s | 51.6 KiB | 00m00s [ 37/175] Installing flexiblas-openblas 100% | 39.0 MiB/s | 39.9 KiB | 00m00s [ 38/175] Installing flexiblas-netlib64 100% | 224.7 MiB/s | 11.0 MiB | 00m00s [ 39/175] Installing libnsl2-0:2.0.1-4. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [ 40/175] Installing cpp-0:15.2.1-2.fc4 100% | 207.4 MiB/s | 38.0 MiB | 00m00s [ 41/175] Installing tzdata-0:2025b-3.f 100% | 23.1 MiB/s | 1.9 MiB | 00m00s [ 42/175] Installing python-pip-wheel-0 100% | 236.0 MiB/s | 1.2 MiB | 00m00s [ 43/175] Installing mpdecimal-0:4.0.1- 100% | 42.7 MiB/s | 218.8 KiB | 00m00s [ 44/175] Installing python3-libs-0:3.1 100% | 164.2 MiB/s | 43.3 MiB | 00m00s [ 45/175] Installing python3-0:3.14.0~r 100% | 1.9 MiB/s | 30.7 KiB | 00m00s [ 46/175] Installing cmake-rpm-macros-0 100% | 8.1 MiB/s | 8.3 KiB | 00m00s [ 47/175] Installing annobin-docs-0:12. 100% | 48.9 MiB/s | 100.1 KiB | 00m00s [ 48/175] Installing cracklib-0:2.9.11- 100% | 10.6 MiB/s | 237.7 KiB | 00m00s [ 49/175] Installing libpwquality-0:1.4 100% | 13.7 MiB/s | 421.6 KiB | 00m00s [ 50/175] Installing gdbm-1:1.23-10.fc4 100% | 23.9 MiB/s | 465.2 KiB | 00m00s [ 51/175] Installing authselect-libs-0: 100% | 36.6 MiB/s | 899.6 KiB | 00m00s [ 52/175] Installing ncurses-0:6.5-7.20 100% | 30.1 MiB/s | 616.4 KiB | 00m00s [ 53/175] Installing perl-Digest-0:1.20 100% | 36.2 MiB/s | 37.1 KiB | 00m00s [ 54/175] Installing perl-Digest-MD5-0: 100% | 30.1 MiB/s | 61.6 KiB | 00m00s [ 55/175] Installing perl-FileHandle-0: 100% | 9.6 MiB/s | 9.8 KiB | 00m00s [ 56/175] Installing perl-B-0:1.89-520. 100% | 123.2 MiB/s | 504.7 KiB | 00m00s [ 57/175] Installing perl-libnet-0:3.15 100% | 95.9 MiB/s | 294.7 KiB | 00m00s [ 58/175] Installing perl-Data-Dumper-0 100% | 57.4 MiB/s | 117.5 KiB | 00m00s [ 59/175] Installing perl-MIME-Base32-0 100% | 31.4 MiB/s | 32.2 KiB | 00m00s [ 60/175] Installing perl-URI-0:5.34-1. 100% | 45.9 MiB/s | 281.8 KiB | 00m00s [ 61/175] Installing perl-IO-Socket-IP- 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [ 62/175] Installing perl-AutoLoader-0: 100% | 20.5 MiB/s | 21.0 KiB | 00m00s [ 63/175] Installing perl-IO-Socket-SSL 100% | 140.3 MiB/s | 718.6 KiB | 00m00s [ 64/175] Installing perl-Net-SSLeay-0: 100% | 135.9 MiB/s | 1.4 MiB | 00m00s [ 65/175] Installing perl-locale-0:1.13 100% | 6.4 MiB/s | 6.5 KiB | 00m00s [ 66/175] Installing perl-if-0:0.61.000 100% | 6.1 MiB/s | 6.2 KiB | 00m00s [ 67/175] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [ 68/175] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 69/175] Installing perl-File-Path-0:2 100% | 63.0 MiB/s | 64.5 KiB | 00m00s [ 70/175] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 71/175] Installing perl-HTTP-Tiny-0:0 100% | 76.4 MiB/s | 156.4 KiB | 00m00s [ 72/175] Installing perl-Pod-Simple-1: 100% | 112.3 MiB/s | 574.9 KiB | 00m00s [ 73/175] Installing perl-POSIX-0:2.23- 100% | 113.6 MiB/s | 232.6 KiB | 00m00s [ 74/175] Installing perl-IPC-Open3-0:1 100% | 27.8 MiB/s | 28.5 KiB | 00m00s [ 75/175] Installing perl-File-Temp-1:0 100% | 80.8 MiB/s | 165.5 KiB | 00m00s [ 76/175] Installing perl-Term-Cap-0:1. 100% | 29.9 MiB/s | 30.6 KiB | 00m00s [ 77/175] Installing perl-Term-ANSIColo 100% | 48.4 MiB/s | 99.2 KiB | 00m00s [ 78/175] Installing perl-Class-Struct- 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 79/175] Installing perl-Pod-Perldoc-0 100% | 9.7 MiB/s | 169.2 KiB | 00m00s [ 80/175] Installing perl-podlators-1:6 100% | 18.5 MiB/s | 321.4 KiB | 00m00s [ 81/175] Installing perl-File-stat-0:1 100% | 12.8 MiB/s | 13.1 KiB | 00m00s [ 82/175] Installing perl-Symbol-0:1.09 100% | 7.1 MiB/s | 7.3 KiB | 00m00s [ 83/175] Installing perl-SelectSaver-0 100% | 2.6 MiB/s | 2.6 KiB | 00m00s [ 84/175] Installing perl-Socket-4:2.04 100% | 39.8 MiB/s | 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| 11.5 MiB/s | 11.8 KiB | 00m00s [ 98/175] Installing perl-constant-0:1. 100% | 26.7 MiB/s | 27.4 KiB | 00m00s [ 99/175] Installing perl-Errno-0:1.38- 100% | 8.6 MiB/s | 8.8 KiB | 00m00s [100/175] Installing perl-vars-0:1.05-5 100% | 4.2 MiB/s | 4.3 KiB | 00m00s [101/175] Installing perl-Scalar-List-U 100% | 36.3 MiB/s | 148.7 KiB | 00m00s [102/175] Installing perl-File-Basename 100% | 14.3 MiB/s | 14.6 KiB | 00m00s [103/175] Installing perl-Carp-0:1.54-5 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [104/175] Installing perl-Encode-4:3.21 100% | 120.4 MiB/s | 4.7 MiB | 00m00s [105/175] Installing perl-PathTools-0:3 100% | 45.1 MiB/s | 184.6 KiB | 00m00s [106/175] Installing perl-DynaLoader-0: 100% | 31.7 MiB/s | 32.5 KiB | 00m00s [107/175] Installing perl-Exporter-0:5. 100% | 18.1 MiB/s | 55.6 KiB | 00m00s [108/175] Installing perl-libs-4:5.42.0 100% | 117.7 MiB/s | 11.6 MiB | 00m00s [109/175] Installing perl-interpreter-4 100% | 7.3 MiB/s | 120.3 KiB | 00m00s [110/175] Installing infiniband-diags-0 100% | 38.2 MiB/s | 978.7 KiB | 00m00s [111/175] Installing rdma-core-devel-0: 100% | 18.2 MiB/s | 688.3 KiB | 00m00s >>> Running sysusers scriptlet: dbus-common-1:1.16.0-4.fc44.noarch >>> Finished sysusers scriptlet: dbus-common-1:1.16.0-4.fc44.noarch >>> Scriptlet output: >>> Creating group 'dbus' with GID 81. >>> Creating user 'dbus' (System Message Bus) with UID 81 and GID 81. >>> [112/175] Installing dbus-common-1:1.16 100% | 501.9 KiB/s | 13.6 KiB | 00m00s [113/175] Installing dbus-broker-0:37-2 100% | 12.3 MiB/s | 389.8 KiB | 00m00s [114/175] Installing dbus-1:1.16.0-4.fc 100% | 3.9 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: systemd-0:258-1.fc44.x86_64 >>> Finished sysusers scriptlet: systemd-0:258-1.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'systemd-journal' with GID 190. >>> >>> Running sysusers scriptlet: systemd-0:258-1.fc44.x86_64 >>> Finished sysusers scriptlet: systemd-0:258-1.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'systemd-oom' with GID 999. >>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and >>> [115/175] Installing systemd-0:258-1.fc 100% | 34.4 MiB/s | 12.9 MiB | 00m00s [116/175] Installing systemd-pam-0:258- 100% | 165.5 MiB/s | 1.2 MiB | 00m00s [117/175] Installing libpipeline-0:1.5. 100% | 4.9 MiB/s | 146.6 KiB | 00m00s [118/175] Installing man-db-0:2.13.1-2. 100% | 37.8 MiB/s | 2.9 MiB | 00m00s [119/175] Installing libtommath-0:1.3.1 100% | 62.3 MiB/s | 127.5 KiB | 00m00s [120/175] Installing tcl-1:9.0.2-1.fc43 100% | 77.5 MiB/s | 4.3 MiB | 00m00s [121/175] Installing procps-ng-0:4.0.4- 100% | 33.7 MiB/s | 1.0 MiB | 00m00s [122/175] Installing environment-module 100% | 34.3 MiB/s | 1.9 MiB | 00m00s [123/175] Installing rpm-mpi-hooks-0:8- 100% | 3.2 MiB/s | 9.7 KiB | 00m00s [124/175] Installing kernel-headers-0:6 100% | 70.9 MiB/s | 6.9 MiB | 00m00s [125/175] Installing glibc-devel-0:2.42 100% | 56.1 MiB/s | 2.4 MiB | 00m00s [126/175] Installing 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[139/175] Installing prrte-libs-0:3.0.6 100% | 151.8 MiB/s | 1.7 MiB | 00m00s [140/175] Installing prrte-0:3.0.6-8.fc 100% | 52.8 MiB/s | 162.2 KiB | 00m00s [141/175] Installing rhash-0:1.4.5-3.fc 100% | 19.3 MiB/s | 356.4 KiB | 00m00s [142/175] Installing libuv-1:1.51.0-2.f 100% | 139.9 MiB/s | 573.0 KiB | 00m00s [143/175] Installing jsoncpp-0:1.9.6-2. 100% | 126.5 MiB/s | 259.2 KiB | 00m00s [144/175] Installing cmake-0:3.31.6-4.f 100% | 239.6 MiB/s | 34.5 MiB | 00m00s [145/175] Installing cmake-data-0:3.31. 100% | 49.3 MiB/s | 9.1 MiB | 00m00s [146/175] Installing libstdc++-devel-0: 100% | 297.5 MiB/s | 37.5 MiB | 00m00s [147/175] Installing gsl-0:2.8-2.fc43.x 100% | 128.2 MiB/s | 3.5 MiB | 00m00s [148/175] Installing lmfit-0:10.0-1.fc4 100% | 21.1 MiB/s | 43.2 KiB | 00m00s [149/175] Installing yaksa-0:0.3-8.fc43 100% | 292.1 MiB/s | 43.8 MiB | 00m00s [150/175] Installing mpich-0:4.2.2-6.fc 100% | 249.3 MiB/s | 7.0 MiB | 00m00s [151/175] Installing muParser-0:2.3.5-3 100% | 179.9 MiB/s | 552.7 KiB | 00m00s [152/175] Installing ocl-icd-0:2.3.4-1. 100% | 112.2 MiB/s | 229.7 KiB | 00m00s [153/175] Installing ucx-0:1.18.1-2.fc4 100% | 92.7 MiB/s | 2.4 MiB | 00m00s [154/175] Installing openmpi-0:5.0.8-6. 100% | 242.1 MiB/s | 7.0 MiB | 00m00s [155/175] Installing tng-0:1.8.2-21.fc4 100% | 169.0 MiB/s | 346.0 KiB | 00m00s [156/175] Installing opencl-headers-0:3 100% | 249.4 MiB/s | 766.1 KiB | 00m00s [157/175] Installing ocl-icd-devel-0:2. 100% | 17.8 MiB/s | 273.9 KiB | 00m00s [158/175] Installing tng-devel-0:1.8.2- 100% | 77.7 MiB/s | 238.8 KiB | 00m00s [159/175] Installing openmpi-devel-0:5. 100% | 81.6 MiB/s | 3.3 MiB | 00m00s [160/175] Installing muParser-devel-0:2 100% | 42.4 MiB/s | 130.2 KiB | 00m00s [161/175] Installing mpich-devel-0:4.2. 100% | 52.4 MiB/s | 2.1 MiB | 00m00s [162/175] Installing lmfit-devel-0:10.0 100% | 31.8 MiB/s | 97.6 KiB | 00m00s [163/175] Installing gsl-devel-0:2.8-2. 100% | 52.1 MiB/s | 1.7 MiB | 00m00s [164/175] Installing gcc-c++-0:15.2.1-2 100% | 265.2 MiB/s | 41.4 MiB | 00m00s [165/175] Installing annobin-plugin-gcc 100% | 38.0 MiB/s | 1.0 MiB | 00m00s [166/175] Installing gcc-plugin-annobin 100% | 2.1 MiB/s | 58.6 KiB | 00m00s [167/175] Installing hwloc-0:2.12.0-2.f 100% | 13.2 MiB/s | 595.7 KiB | 00m00s [168/175] Installing hwloc-devel-0:2.12 100% | 33.2 MiB/s | 747.8 KiB | 00m00s [169/175] Installing perl-File-Copy-0:2 100% | 19.7 MiB/s | 20.2 KiB | 00m00s [170/175] Installing perl-lib-0:0.65-52 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [171/175] Installing authselect-0:1.6.2 100% | 8.7 MiB/s | 204.1 KiB | 00m00s [172/175] Installing pam-0:1.7.1-3.fc43 100% | 44.2 MiB/s | 1.7 MiB | 00m00s [173/175] Installing flexiblas-devel-0: 100% | 196.2 MiB/s | 4.9 MiB | 00m00s [174/175] Installing fftw-devel-0:3.3.1 100% | 94.5 MiB/s | 290.3 KiB | 00m00s [175/175] Installing systemd-rpm-macros 100% | 22.5 KiB/s | 8.9 KiB | 00m00s Warning: skipped OpenPGP checks for 173 packages from repositories: copr_coprdir, http_kojipkgs_fedoraproject_org_repos_f44_build_latest_basearch Complete! Finish: build setup for gromacs-2025.3-2.fc44.src.rpm Start: rpmbuild gromacs-2025.3-2.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1758240000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.TAP0Vn Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.18Ksw1 + umask 022 + cd /builddir/build/BUILD/gromacs-2025.3-build + cd /builddir/build/BUILD/gromacs-2025.3-build + rm -rf gromacs-2025.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/gromacs-2025.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2025.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2025.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + install -Dpm644 /builddir/build/SOURCES/manual-2025.3.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/build-fftw src/external/fftpack src/external/lmfit src/external/muparser src/external/tng_io + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ezgtlI + umask 022 + cd /builddir/build/BUILD/gromacs-2025.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2025.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -z '' + cp -al ../regressiontests-2025.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Torch not found. Neural network potential support will be disabled. -- Using default binary suffix: "" -- Using default library suffix: "" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.0s) -- Generating done (0.8s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/accessors.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 0%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_array.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_stdio.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 0%] Built target internal_rpc_xdr [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/action.transpose.cpp /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/errhandler.cpp [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/enqueue.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/atomic.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/lock.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/pthreads.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/barrier.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/p2p_send_recv.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/p2p_wait.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/collective.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/list.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/type.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/scan.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/numa_malloc.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/once.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 3%] Built target thread_mpi /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvaratoms.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abf.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abmd.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_alb.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/lifetime.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/md5sum.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/plan.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/repo.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_meta.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/stdafx.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/transform.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractoption.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractsection.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/basicoptions.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/behaviorcollection.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoption.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_angles.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_apath.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/options.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsassigner.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsection.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsvisitor.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/timeunitmanager.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/treesupport.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_coordnums.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 8%] Built target options /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_distances.cpp [ 10%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pull.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_gpath.cpp [ 10%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pull_rotation.cpp [ 10%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 10%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pullutil.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_protein.cpp [ 10%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/transformationcoordinate.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 10%] Built target pulling /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis/energyterm.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 10%] Built target energyanalysis /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd 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object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/parser.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_rotations.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_torchann.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/mdrun.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/legacymodules.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 10%] Built target gmx_objlib /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd 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Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarmodule.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/usergpuids.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 10%] Built target taskassignment [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/computeglobalselement.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/constraintelement.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/domdechelper.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_replicas.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/energydata.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/forceelement.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/modularsimulator.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/signallers.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/trajectoryelement.cpp [ 14%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 14%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 14%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/any.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/alignedallocator.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/basenetwork.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/textwriter.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 25%] Building CXX object 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 26%] Building CXX object 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/benchmark/bench_setup.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/benchmark/bench_system.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/exclusionchecker.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlist.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairsearch.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/ga2la.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/haloexchangesetup.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/localatomsetmanager.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/helpmanager.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/com.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/splineutil.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectory/trajectoryframe.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/imd/imd.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/gmx_gyrate.cpp [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/toputil.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/vsite_parm.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/dataframe.cpp [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxlib/conformation_utilities.cpp [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/mdebin_bar.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/updategroups.cpp [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp In file included from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp:66: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::future_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 2359 | __PLUMED_WRAPPER_STD strncpy(this->msg,msg,__PLUMED_WRAPPER_CXX_EXCEPTION_BUFFER); | ^ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::regex_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/nnpotforceprovider_stub.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/ewald.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/pme_gpu_program.cpp [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/detecthardware.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/device_management_ocl.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/multisim.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/printtime.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selectionoptionmanager.cpp [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/sm_same.cpp [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/sm_simple.cpp [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/symrec.cpp [ 96%] Linking CXX shared library ../../lib/libgromacs.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/libgromacs.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs.so.10 -o ../../lib/libgromacs.so.10.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 /usr/lib64/liblmfit.so -ldl cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.10.0.0 ../../lib/libgromacs.so.10 ../../lib/libgromacs.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd 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../../bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target template [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/exceptions.cpp /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/box.cpp [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/particlesequencer.cpp [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF CMakeFiles/nblib.dir/particletype.cpp.o.d -o CMakeFiles/nblib.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/particletype.cpp [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o CMakeFiles/nblib.dir/simulationstate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/simulationstate.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/gmxapi.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi.so.0 -o ../../lib/libgmxapi.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi.so.0.4.0 ../../lib/libgmxapi.so.0 ../../lib/libgmxapi.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target gmxapi [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/topologyhelpers.cpp /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target gmx [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF CMakeFiles/nblib.dir/topology.cpp.o.d -o CMakeFiles/nblib.dir/topology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/topology.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include 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api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/util/setup.cpp [100%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/nblib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib: -lm ../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o [100%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples/argon-forces-integration.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples/methane-water-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/argon-forces-integration.dir/link.d "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target argon-forces-integration /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/methane-water-integration.dir/link.d "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target methane-water-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich + pushd mpich + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Torch not found. Neural network potential support will be disabled. -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (21.2s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis/energyterm.cpp [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/accessors.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Built target energyanalysis [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/action.transpose.cpp /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Built target release-version-info [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/enqueue.cpp /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_array.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_stdio.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Built target internal_rpc_xdr [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/fft_binary_lookup.cpp /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/errhandler.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/atomic.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/pthreads.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Built target thread_mpi /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvar.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.copy.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.stockham.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvaratoms.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abf.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abmd.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_alb.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/lifetime.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/md5sum.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/plan.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_meta.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/repo.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/stdafx.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/transform.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_opes.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/stdafx.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 3%] Built target clFFT /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/eigensolver.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/gmx_arpack.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/matrix.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/sparsematrix.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 3%] Built target linearalgebra [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_angles.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_apath.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_combination.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_coordnums.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_distances.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_gpath.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_protein.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_rotations.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_torchann.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_volmaps.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvardeps.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvargrid.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarmodule.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparams.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparse.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractoption.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractsection.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/basicoptions.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_replicas.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/behaviorcollection.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoption.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_bias.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/options.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsassigner.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsection.cpp [ 8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/treesupport.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarvalue.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 8%] Built target options [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/nr_jacobi.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && 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CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/output.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 8%] Built target colvars_objlib /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build 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8%] Built target scanner /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/transformationcoordinate.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 10%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/checkpointhelper.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/findallgputasks.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/reportgpuusage.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/resourcedivision.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/computeglobalselement.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/taskassignment.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/trajectoryelement.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 14%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs 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object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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-msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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&& /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [ 40%] Building CXX object 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp In file included from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp:66: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::future_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 2359 | __PLUMED_WRAPPER_STD strncpy(this->msg,msg,__PLUMED_WRAPPER_CXX_EXCEPTION_BUFFER); | ^ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::regex_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] At top level: cc1plus: 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modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/share/template && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template/template.cpp [100%] Linking CXX executable ../../bin/gmx_mpich cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/template.dir/link.d CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi + pushd openmpi ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.8 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Torch not found. Neural network potential support will be disabled. -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.9s) -- Generating done (0.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/accessors.cpp [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis/energyterm.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Built target energyanalysis /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_array.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_stdio.cpp [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/action.transpose.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Built target internal_rpc_xdr /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/errhandler.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/atomic.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/pthreads.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 0%] Built target thread_mpi [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include 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[ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.copy.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.stockham.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvaratoms.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abf.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abmd.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/generator.transpose.gcn.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_alb.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/lifetime.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/md5sum.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/plan.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_meta.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/repo.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/stdafx.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library/transform.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_opes.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src/statTimer/stdafx.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 3%] Built target clFFT [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_angles.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_apath.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_combination.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_coordnums.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd 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object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/behaviorcollection.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_protein.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoption.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_rotations.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/options.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_torchann.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsassigner.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_volmaps.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsection.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsvisitor.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/timeunitmanager.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvardeps.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/treesupport.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 7%] Built target options [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarmodule.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparams.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparse.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_replicas.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_bias.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarvalue.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/nr_jacobi.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 8%] Built target colvars_objlib /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend [ 8%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/output.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 8%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/transformationcoordinate.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 10%] Built target pulling /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/checkpointhelper.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/findallgputasks.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/reportgpuusage.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/resourcedivision.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/computeglobalselement.cpp [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/signallers.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 12%] Building CXX object 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-fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 14%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [ 14%] Building CXX object 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o 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[ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp In file included from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp:66: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::future_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 2359 | __PLUMED_WRAPPER_STD strncpy(this->msg,msg,__PLUMED_WRAPPER_CXX_EXCEPTION_BUFFER); | ^ 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modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/share/template && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template/template.cpp [100%] Linking CXX executable ../../bin/gmx_openmpi cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/template.dir/link.d CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d + test -z '' + cp -al ../regressiontests-2025.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/tests -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Torch not found. Neural network potential support will be disabled. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (21.1s) -- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/parser.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 0%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_array.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_stdio.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 0%] Built target internal_rpc_xdr /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/atomic.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/pthreads.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/alltoall.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/barrier.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/bcast.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/p2p_wait.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/collective.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/profile.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/comm.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/reduce.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/event.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/reduce_fast.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/gather.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/scatter.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/group.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_init.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/topology.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/list.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd 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src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram.cpp [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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pulling /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 3%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/mdrun.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_opes.cpp [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/nonbonded_bench.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 3%] Built target mdrun_objlib [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 3%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/gmx.cpp [ 3%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/legacymodules.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 3%] Built target gmx_objlib [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto 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Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_combination.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_coordnums.cpp /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ 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CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidegpuusage.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_distances.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/findallgputasks.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/reportgpuusage.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_gpath.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/resourcedivision.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/taskassignment.cpp [ 5%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/usergpuids.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 5%] Built target taskassignment [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_protein.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_rotations.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_torchann.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_volmaps.cpp /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparams.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparse.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o cd 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/forceelement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/modularsimulator.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_replicas.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/mttk.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/nosehooverchains.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_bias.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/propagator.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 8%] Built target colvars_objlib [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/pullelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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-DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/trajectoryelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 18%] Building CXX object 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/atomdata.cpp [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/exclusionchecker.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/freeenergydispatch.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/grid.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/gridset.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_1x1.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_1x1.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_4x4.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_4x4.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/nbnxm.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/nbnxm_geometry.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/nbnxm_setup.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlist.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlist_simd_kernel.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlist_tuning.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlistparams.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlistset.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairlistwork.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/pairsearch.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/prunekerneldispatch.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/simd_energy_accumulator.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/simd_prune_kernel.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlinehelpcontext.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlinehelpmodule.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlinehelpwriter.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlineinit.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlinemodule.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlinemodulemanager.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlineoptionsmodule.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlineparser.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/cmdlineprogramcontext.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/filenm.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/pargs.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/shellcompletions.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/viewit.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/atomdistribution.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/distribute.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/domdec_constraints.cpp [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/domdec_setup.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/domdec_specatomcomm.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/domdec_vsite.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/domdec_zones.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/dump.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/ga2la.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/gpuhaloexchange_impl.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/haloexchangesetup.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/localatomsetdata.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/localtopologychecker.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/mdsetup.cpp [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/nsgrid.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/partition.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/redistribute.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/reversetopology.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/utility.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/3dtransforms.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/coordinatetransformation.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -MF CMakeFiles/libgromacs.dir/math/veccompare.cpp.o.d -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/veccompare.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -MF CMakeFiles/libgromacs.dir/math/vecdump.cpp.o.d -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/vecdump.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/awh_history.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/checkpointdata.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/commrec.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/state.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/threaded_force_buffer.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/helpformat.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/helpmanager.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/helptopic.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/helpwritercontext.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/rstparser.cpp [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tabulatednormaldistribution.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/restraint/manager.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/restraint/restraintmdmodule.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/cubicsplinetable.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/forcetable.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/quadraticsplinetable.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/splineutil.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/cyclecounter.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/index.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/invblock.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/mtop_atomloops.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/mtop_util.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/residuetypes.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/symtab.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/topology.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/topsort.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectory/trajectoryframe.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/swap/swapcoords.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/frameconverters/register.cpp [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/outputadaptercontainer.cpp [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/outputadapters/outputselector.cpp [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 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object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/gyrate.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/hbond.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/isotope.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/pairdist.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/rdf.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/sasa.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/qmmmtopologypreprocessor.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/qmmm.cpp [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp In file included from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp:66: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::future_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 2359 | __PLUMED_WRAPPER_STD strncpy(this->msg,msg,__PLUMED_WRAPPER_CXX_EXCEPTION_BUFFER); | ^ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::regex_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/listed_internal.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/manage_threading.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/orires.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/pairs.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/position_restraints.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/restcbt.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/calculate_spline_moduli.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/ewald.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/ewald_utils.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/long_range_correction.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/pme.cpp [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/symrec.cpp [ 96%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/libgromacs.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs_d.so.10 -o ../../lib/libgromacs_d.so.10.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lflexiblas -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 /usr/lib64/liblmfit.so -ldl cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.10.0.0 ../../lib/libgromacs_d.so.10 ../../lib/libgromacs_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [ 96%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/session.cpp [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/workflow.cpp [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/gmxapi/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/particlesequencer.cpp [ 98%] Linking CXX shared library ../../lib/libgmxapi_d.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o CMakeFiles/nblib.dir/simulationstate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/simulationstate.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/gmxapi.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi_d.so.0 -o ../../lib/libgmxapi_d.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib: ../../lib/libgromacs_d.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi_d.so.0.4.0 ../../lib/libgmxapi_d.so.0 ../../lib/libgmxapi_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Built target gmxapi /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_d cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Built target gmx [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/util/setup.cpp [100%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/nblib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib: -lm ../../lib/libgromacs_d.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples/methane-water-integration.cpp [100%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples/argon-forces-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/argon-forces-integration.dir/link.d "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/methane-water-integration.dir/link.d "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' [100%] Built target methane-water-integration [100%] Built target argon-forces-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + pushd mpich_d + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Torch not found. Neural network potential support will be disabled. -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (24.6s) -- Generating done (1.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/parser.cpp [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis/energyterm.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Built target energyanalysis /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_array.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr_stdio.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Built target internal_rpc_xdr /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/errhandler.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/atomic.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/src/pthreads.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Built target thread_mpi /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Entering directory 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvar.cpp [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include 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CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/scanner.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 0%] Built target scanner /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractoption.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/abstractsection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/basicoptions.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvaratoms.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/behaviorcollection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoption.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abf.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/options.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsassigner.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/optionsvisitor.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/timeunitmanager.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/treesupport.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 1%] Built target options [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_abmd.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_alb.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_meta.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_opes.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_angles.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_apath.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_combination.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/output.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_coordnums.cpp [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pull.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_distances.cpp [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ 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/usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pull_rotation.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pullutil.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 5%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/gmx.cpp [ 6%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/legacymodules.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_rotations.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 6%] Built target gmx_objlib /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment 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CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidegpuusage.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_torchann.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/taskassignment.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvargrid.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/usergpuids.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 6%] Built target taskassignment /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/checkpointhelper.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/computeglobalselement.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/constraintelement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparams.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/domdechelper.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparse.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/energydata.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/forceelement.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/modularsimulator.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/mttk.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_bias.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/nosehooverchains.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarvalue.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/trajectoryelement.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 11%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [ 11%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/alignedallocator.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/quadraticsplinetable.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/editconf.cpp [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/resall.cpp [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedMDModule.cpp In file included from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/plumedforceprovider.cpp:66: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::future_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 2359 | __PLUMED_WRAPPER_STD strncpy(this->msg,msg,__PLUMED_WRAPPER_CXX_EXCEPTION_BUFFER); | ^ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h: In member function ‘PLMD::Plumed::add_buffer_to::add_buffer_to(std::regex_error const&, char const*)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_mpich_d cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template/template.cpp [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/template.dir/link.d CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich_d -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich_d.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora44 -DGMX_SIMD=SSE2 -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 15.2.1 -- The CXX compiler identification is GNU 15.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.14.0", minimum required is "3.9") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.8 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Torch not found. Neural network potential support will be disabled. -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD EPYC 7302 16-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 49 -- Detected build CPU stepping - 0 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma lahf misalignsse mmx msr pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Found Python: /usr/bin/python3.14 (found version "3.14.0") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (22.5s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/selection 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-cast-function-type-strict -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis/energyterm.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 0%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' 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-DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -MF CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d -o CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr/xdr.cpp [ 0%] Building CXX object src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/external/rpc_xdr && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/filenameoptionmanager.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -isystem 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src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/pullutil.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp [ 1%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/transformationcoordinate.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/15/bits/basic_string.h:1847:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/15/bits/basic_string.h:916:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 1%] Built target pulling /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd 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CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/nonbonded_bench.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 3%] Built target mdrun_objlib /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs 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CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/legacymodules.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 5%] Built target gmx_objlib /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_alchlambda.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd 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CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/reportgpuusage.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/constraintelement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d -o 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarcomp_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvargrid.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/forceelement.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd 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CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/modularsimulator.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/mttk.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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&& /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarparse.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/nosehooverchains.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_io.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/propagator.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_replicas.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_system.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_tcl.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarproxy_volmaps.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvars_memstream.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/pullelement.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/signallers.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_bias.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvarscript_commands_colvar.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/colvartypes.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 11%] Built target colvars_objlib [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/topologyholder.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/trajectoryelement.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 11%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [ 11%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/any.cpp cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/plumed/Plumed.h:2359:35: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include 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-Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/nnpotoptions.cpp At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/nnpot.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_openmpi_d cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/share/template/template.cpp [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/template.dir/link.d CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi_d -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.whpR57 + umask 022 + cd /builddir/build/BUILD/gromacs-2025.3-build + '[' /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT ++ dirname /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + mkdir -p /builddir/build/BUILD/gromacs-2025.3-build + mkdir /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2025.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/ps.m2p -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/ffG43a2.itp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/atommass.dat -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/spc216.gro -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/surface.dat -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/phbres.dat -- Installing: 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Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/gmxapi.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/exceptions.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/md.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/md -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/system.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/topology.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/box.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/vector.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/exception.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs.so.10.0.0 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs.so.10 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs.so -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs.pc -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-hints.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/vec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: 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/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: 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Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 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mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + _mlstatus=0 + return 0 + pushd openmpi + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: 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-- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + popd + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: 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/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libnblib_gmx.so -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/box.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/vector.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/exception.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.10.0.0 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.10 -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/libgromacs_d.so -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs_d.pc -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs-hints_d.cmake -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: 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/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/symtab.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/atoms.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/index.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/topology_enums.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/idef.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/block.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/ifunc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/topology/forcefieldparameters.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: 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/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n mpich + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/openmpi_d ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + DESTDIR=/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: 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/builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 + popd ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + test -n openmpi + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT ~/build/BUILD/gromacs-2025.3-build/BUILDROOT ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + rm .//usr/lib64/mpich/bin/GMXRC .//usr/lib64/mpich/bin/GMXRC.bash .//usr/lib64/mpich/bin/GMXRC.csh .//usr/lib64/mpich/bin/GMXRC.zsh .//usr/lib64/openmpi/bin/GMXRC .//usr/lib64/openmpi/bin/GMXRC.bash .//usr/lib64/openmpi/bin/GMXRC.csh .//usr/lib64/openmpi/bin/GMXRC.zsh .//usr/lib64/mpich/bin/demux.pl .//usr/lib64/mpich/bin/xplor2gmx.pl .//usr/lib64/openmpi/bin/demux.pl .//usr/lib64/openmpi/bin/xplor2gmx.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash .//usr/lib64/mpich/bin/gmx-completion.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash .//usr/lib64/openmpi/bin/gmx-completion.bash + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2025.3-2.fc44 --unique-debug-suffix -2025.3-2.fc44.x86_64 --unique-debug-src-base gromacs-2025.3-2.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/gromacs-2025.3-2.fc44.x86_64 cpio: mpich/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/g_xplor2gmx.pl from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/bin/g_demux.pl from /usr/bin/env perl to #!/usr/bin/perl + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j2 /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT Scanned 336 directories and 2706 files, processed 102 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/gromacs-2025.3-build/BUILDROOT/usr Scanned 335 directories and 2706 files, considered 2696 files, read 880 files, linked 342 files, 0 errors sum of sizes of linked files: 2221098 bytes Reading /builddir/build/BUILD/gromacs-2025.3-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.B1DU1o + umask 022 + cd /builddir/build/BUILD/gromacs-2025.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2025.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + [[ '' = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j2 --verbose --target tests Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 tests /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 tests gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/CMakeFiles 91 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' Consolidate compiler generated dependencies of target mdrun_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/src/gtest-all.cc [ 0%] Built target mdrun_objlib /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 1%] Built target clFFT /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 1%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" Dependencies file "src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 6%] Built target colvars_objlib /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target linearalgebra gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 6%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target options gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 7%] Built target options /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 7%] Built target pulling /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 7%] Built target energyanalysis /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 7%] Built target scanner /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 7%] Built target taskassignment /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 8%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domainpaircomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchange.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/haloexchangesetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/h5md.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/h5md_guard.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/h5md_low_level_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_simd_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_energy_accumulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/hip_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/link.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 59%] Built target libgromacs /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/link.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gmxapi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/gmxapi/CMakeFiles/gmxapi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 60%] Built target gmxapi /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/link.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target nblib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/compiler_depend.internal". Dependencies file "api/nblib/samples/CMakeFiles/argon-forces-integration.dir/link.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target argon-forces-integration gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Built target argon-forces-integration /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/compiler_depend.internal". Dependencies file "api/nblib/samples/CMakeFiles/methane-water-integration.dir/link.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target methane-water-integration gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Built target methane-water-integration [ 61%] Linking CXX shared library ../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/gtest.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.13.0 -o ../../../../lib/libgtest.so.1.13.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -MD -MT src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/src/gmock-all.cc [ 61%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/gmock.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.13.0 -o ../../../../lib/libgmock.so.1.13.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libgtest.so.1.13.0 cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgmock.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 61%] Built target gmock /usr/bin/gmake -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 64%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd 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CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 64%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 [ 64%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/testutils-mpi-test.dir/link.d "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 64%] Built target testutils-mpi-test /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 64%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/tests/xvgtest_tests.cpp [ 64%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -MF CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o.d -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 64%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 [ 64%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/arrayref.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/testutils-test.dir/link.d "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/naming.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 64%] Built target testutils-test /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 65%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/utility-mpi-test.dir/link.d "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 65%] Built target utility-mpi-test [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o -MF CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/bitmask32.cpp [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/bitmask64.cpp /usr/bin/gmake -f src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/build.make src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/enumerationhelpers.cpp [ 65%] Building CXX object src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 65%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -MF CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o.d -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/inmemoryserializer.cpp [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nonbonded-fep-test.dir/link.d "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 -lm ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 65%] Built target nonbonded-fep-test [ 65%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o -MF CMakeFiles/mdlib-test.dir/calcvir.cpp.o.d -o CMakeFiles/mdlib-test.dir/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/calcvir.cpp [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/strconvert.cpp [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/settle.cpp [ 68%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroups.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/updategroups.cpp [ 68%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 69%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 69%] Built target mdlib-test [ 69%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build.make src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build.make src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 69%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp [ 69%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 [ 69%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingamplitudelookup.cpp [ 69%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 69%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/awh-test.dir/link.d "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 69%] Built target awh-test [ 69%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 69%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp [ 69%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/density_fitting_applied_forces-test.dir/link.d "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 70%] Built target density_fitting_applied_forces-test [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 70%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 70%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvarspreprocessor.cpp [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvarsforceprovider.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/qmmm_applied_forces-test.dir/link.d "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 70%] Built target qmmm_applied_forces-test [ 70%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o -MF CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o.d -o CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumedOptions.cpp [ 71%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 [ 71%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../../bin/plumed_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/plumed_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/colvars_applied_forces-test.dir/link.d "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Built target colvars_applied_forces-test /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o -MF CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o.d -o CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumed_md_test.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/plumed_applied_forces-test.dir/link.d "CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o" "CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/plumed_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Built target plumed_applied_forces-test [ 71%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o -MF CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o.d -o CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumedTestUtils.cpp /usr/bin/gmake -f src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build.make src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build.make src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests/nnpot.cpp [ 71%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests/nnpotoptions.cpp [ 71%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../../bin/plumed_md-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/plumed_md-test.dir/link.txt --verbose=1 [ 71%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/plumed_md-test.dir/link.d "CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o" "CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o" "CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/plumed_md-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libmdrun_test_infrastructure.a -ldl ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Built target plumed_md-test /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/tests/electricfield.cpp [ 71%] Linking CXX executable ../../../../../bin/nnpot_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nnpot_applied_forces-test.dir/link.txt --verbose=1 [ 71%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nnpot_applied_forces-test.dir/link.d "CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nnpot_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../../lib/libtestutils.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Built target nnpot_applied_forces-test /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests/bonded.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/applied_forces-test.dir/link.d "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Built target applied_forces-test /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 71%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 72%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/simd_energy_accumulator.cpp [ 72%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include 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CMakeFiles/nbnxm-test.dir/testsystem.cpp.o.d -o CMakeFiles/nbnxm-test.dir/testsystem.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/testsystem.cpp [ 73%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 [ 73%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nbnxm-test.dir/link.d "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o" "CMakeFiles/nbnxm-test.dir/testsystem.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 73%] Built target nbnxm-test /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 73%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wl,--dependency-file=CMakeFiles/listed_forces-test.dir/link.d "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 73%] Built target listed_forces-test /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 73%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 73%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && 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-MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 73%] Built target onlinehelp-test-shared /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 73%] Linking CXX executable ../../../../bin/nbnxm-gpu-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-gpu-test.dir/link.txt --verbose=1 [ 73%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 74%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nbnxm-gpu-test.dir/link.d "CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o" "CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-gpu-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 74%] Built target nbnxm-gpu-test /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/domdec-test.dir/link.d "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 74%] Built target domdec-test [ 74%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmegathertest.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 74%] Built target domdec-mpi-test [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmesolvetest.cpp /usr/bin/gmake -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o -MF CMakeFiles/fft-test.dir/fft.cpp.o.d -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fft/tests/fft.cpp [ 74%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 74%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 74%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pme.cpp [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -MF CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o.d -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmetestcommon.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/fft-test.dir/link.d "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 75%] Built target fft-test [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 75%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -MF CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/pinnedmemorychecker.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_buffer.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/ewald-test.dir/link.d "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 75%] Built target ewald-test [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -MF 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/cpuinfo.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/hardwaretopology.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/mockhardwaretopology.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -MF CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/typecasts.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/device_management.cpp [ 76%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/hardware-test.dir/link.d "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 76%] Built target hardware-test /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/gpu_utils-test.dir/link.d "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 76%] Built target gpu_utils-test [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o -MF CMakeFiles/math-test.dir/boxmatrix.cpp.o.d -o CMakeFiles/math-test.dir/boxmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/boxmatrix.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/complex.cpp.o -MF CMakeFiles/math-test.dir/complex.cpp.o.d -o CMakeFiles/math-test.dir/complex.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/complex.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/functions.cpp [ 78%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdspan-test.dir/link.d "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 78%] Built target mdspan-test /usr/bin/gmake -f src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/build.make src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/build.make src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 78%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include 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CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/enerdata.cpp [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/gausstransform.cpp [ 78%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o -MF CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/paddedvector.cpp [ 78%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -MF CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o.d -o CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/multipletimestepping.cpp [ 78%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/vectypes.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdtypes-test.dir/link.d "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 79%] Built target mdtypes-test /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 79%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/onlinehelp-test.dir/link.d "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 79%] Built target onlinehelp-test /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/abstractoptionstorage.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/filenameoption.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/filenameoptionmanager.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o -MF CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/optionsassigner.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/math-test.dir/link.d "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/complex.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 79%] Built target math-test /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/com.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/repeatingsection.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/mshift.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/pbc.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o -MF CMakeFiles/options-test.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/timeunitmanager.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/pbcenums.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o -MF CMakeFiles/options-test.dir/treesupport.cpp.o.d -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/treesupport.cpp [ 80%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/pbcutil-test.dir/link.d "CMakeFiles/pbcutil-test.dir/com.cpp.o" "CMakeFiles/pbcutil-test.dir/mshift.cpp.o" "CMakeFiles/pbcutil-test.dir/pbc.cpp.o" "CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o" "CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pbcutil-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 80%] Built target pbcutil-test /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests/exponentialdistribution.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests/gammadistribution.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests/uniformrealdistribution.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/options-test.dir/link.d "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 80%] Built target options-test [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/restraint/tests/manager.cpp [ 80%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 [ 81%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/restraintpotential-test.dir/link.d "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 81%] Built target restraintpotential-test /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 81%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/tests/splinetable.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/random-test.dir/link.d "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 81%] Built target random-test [ 82%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/tests/usergpuids.cpp [ 82%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 [ 82%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/taskassignment-test.dir/link.d "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Built target taskassignment-test /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/timing/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/tests/timing.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/table-test.dir/link.d "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Built target table-test [ 82%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o -MF CMakeFiles/topology-test.dir/atoms.cpp.o.d -o CMakeFiles/topology-test.dir/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/atoms.cpp [ 82%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/timing-test.dir/link.d "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Built target timing-test /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/tests/pull.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -MF CMakeFiles/topology-test.dir/exclusionblocks.cpp.o.d -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/exclusionblocks.cpp [ 82%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/idef.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/index.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o -MF CMakeFiles/topology-test.dir/mtop.cpp.o.d -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/mtop.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/pull-test.dir/link.d "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 82%] Built target pull-test /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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/usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/base.cpp [ 82%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o -MF CMakeFiles/simd-test.dir/scalar_util.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/scalar_util.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/scalar_math.cpp [ 83%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_integer.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/topology-test.dir/link.d "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 83%] Built target topology-test [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -MF CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_memory.cpp In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/istream:43, from /usr/include/c++/15/sstream:42, from /usr/include/c++/15/bits/quoted_string.h:40, from /usr/include/c++/15/iomanip:55, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:45: In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:410:86: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘maxUlpDiffPos’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:294:23: note: ‘maxUlpDiffPos’ was declared here 294 | real maxUlpDiffPos; | ^~~~~~~~~~~~~ In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:412:63: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘refValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:295:23: note: ‘refValMaxUlpDiff’ was declared here 295 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~ In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:413:63: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘simdValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:295:41: note: ‘simdValMaxUlpDiff’ was declared here 295 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_vector_operations.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o -MF CMakeFiles/simd-test.dir/simd4.cpp.o.d -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_math.cpp [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_vector_operations.cpp /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/compat-test.dir/link.d "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory 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"--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_chi.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/simd-test.dir/link.d "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Built target simd-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/convparm.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/editconf.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/gmxana-test.dir/link.d "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Built target gmxana-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 84%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/pdb2gmx1-test.dir/link.d "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Built target pdb2gmx1-test [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/readir.cpp [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 [ 84%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/pdb2gmx2-test.dir/link.d "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 85%] Built target pdb2gmx2-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/gmxpreprocess-test.dir/link.d "CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 85%] Built target gmxpreprocess-test /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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85%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/correlations-test.dir/expfit.cpp.o.d -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/expfit.cpp [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/pdb2gmx3-test.dir/link.d "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 86%] Built target pdb2gmx3-test /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 86%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 [ 86%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests/mock_datamodule.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/correlations-test.dir/link.d "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 86%] Built target correlations-test /usr/bin/gmake -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 86%] Built target analysisdata-test-shared /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 [ 86%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/tests/register.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/energyanalysis-test.dir/link.d "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 86%] Built target energyanalysis-test [ 86%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o -MF CMakeFiles/tool-test.dir/helpwriting.cpp.o.d -o CMakeFiles/tool-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/helpwriting.cpp [ 86%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 86%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests && 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 [ 86%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wl,--dependency-file=CMakeFiles/tool-test.dir/link.d "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 87%] Built target tool-test /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 87%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/convert-tpr-with-leaks.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/coordinateio-test.dir/link.d "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o -MF CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/confio.cpp [ 87%] Linking CXX executable ../../../../bin/tool-test-with-leaks cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test-with-leaks.dir/link.txt --verbose=1 [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o -MF CMakeFiles/fileio-test.dir/filemd5.cpp.o.d -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/filemd5.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/tool-test-with-leaks.dir/link.d "CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o" "CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test-with-leaks -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 87%] Built target tool-test-with-leaks [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/matio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -MF CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/tngio.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o -MF CMakeFiles/selection-test.dir/nbsearch.cpp.o.d -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/tests/nbsearch.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/tests/selectioncollection.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/fileio-test.dir/link.d "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/matio.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 89%] Built target fileio-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/compressed_x_output.cpp [ 89%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/helpwriting.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-output-test cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-output-test.dir/link.d "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 90%] Built target mdrun-output-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/densityfittingmodule.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/interactiveMD.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/mimic.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/selection-test.dir/link.d "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 90%] Built target selection-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/checkpoint.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-modules-test.dir/link.d "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o 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-DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/exactcontinuation.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -MF CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o.d -o CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/multiple_time_stepping.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-io-test.dir/link.d "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-io-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-test.dir/link.d "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.d "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-single-rank-algorithms-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/nonbonded_bench.cpp [ 92%] Linking CXX executable ../../../../bin/minimize-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimize-test.dir/link.txt --verbose=1 [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/rerun.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/minimize-test.dir/link.d "CMakeFiles/minimize-test.dir/minimize.cpp.o" "CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/minimize-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target minimize-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-tpi-test.dir/link.d "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-tpi-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/mimic.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" 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/usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-non-integrator-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-Wl,--dependency-file=CMakeFiles/mdrun-mpi-test.dir/link.d "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-mpi-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/replicaexchange.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-multisim-test.dir/link.d "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-multisim-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-multisim-replex-test.dir/link.d "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Built target mdrun-multisim-replex-test [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/pmetest.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-mpi-pme-test.dir/link.d "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 93%] Built target mdrun-mpi-pme-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.d "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 93%] Built target mdrun-multisim-replex-equivalence-test [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_basic.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_coupling.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-coordination-basic-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-coordination-coupling-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/expandedensemble.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-coordination-constraints-test.dir/link.d "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o" "CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-constraints-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-coordination-constraints-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/pull.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/pull.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/freeenergy.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-fep-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-fep-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-fep-test.dir/link.d "CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o" "CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o" "CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-fep-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/pull_rotation.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-pull-test.dir/link.d "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-pull-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/simulator.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-rotation-test.dir/link.d "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-rotation-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/virtualsites.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-simulator-comparison-test.dir/link.d "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-simulator-comparison-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o -MF CMakeFiles/gmxapi-test.dir/restraint.cpp.o.d -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests/restraint.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 [ 94%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o -MF CMakeFiles/gmxapi-test.dir/runner.cpp.o.d -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests/runner.cpp [ 94%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o -MF CMakeFiles/gmxapi-test.dir/status.cpp.o.d -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests/status.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrun-vsites-test.dir/link.d "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 94%] Built target mdrun-vsites-test [ 95%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -MF CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o.d -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests/stopsignaler.cpp [ 95%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o -MF CMakeFiles/gmxapi-test.dir/system.cpp.o.d -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests/system.cpp [ 95%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o -MF CMakeFiles/gmxapi-test.dir/version.cpp.o.d -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o -MF CMakeFiles/workflow-details-test.dir/workflow.cpp.o.d -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/workflow/tests/workflow.cpp [ 95%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/workflow-details-test.dir/link.d "CMakeFiles/workflow-details-test.dir/workflow.cpp.o" "CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.4.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Built target workflow-details-test /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o -MF CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o.d -o CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/integrator.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/gmxapi-test.dir/link.d "CMakeFiles/gmxapi-test.dir/restraint.cpp.o" "CMakeFiles/gmxapi-test.dir/runner.cpp.o" "CMakeFiles/gmxapi-test.dir/status.cpp.o" "CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o" "CMakeFiles/gmxapi-test.dir/system.cpp.o" "CMakeFiles/gmxapi-test.dir/version.cpp.o" "CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.4.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Built target gmxapi-test /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-setup-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-setup-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-setup-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-setup-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-setup-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/box.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/box.cpp.o -MF CMakeFiles/nblib-setup-test.dir/box.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/box.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -MF CMakeFiles/nblib-setup-test.dir/interactions.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/interactions.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -MF CMakeFiles/nblib-setup-test.dir/particletype.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/particletype.cpp [ 96%] Linking CXX executable ../../../bin/nblib-integrator-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integrator-test.dir/link.txt --verbose=1 [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -MF CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/pbcholder.cpp [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/molecules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/molecules.cpp.o -MF CMakeFiles/nblib-setup-test.dir/molecules.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/molecules.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-integrator-test.dir/link.d "CMakeFiles/nblib-integrator-test.dir/integrator.cpp.o" "CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integrator-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Built target nblib-integrator-test [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -MF CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/nbnxmsetup.cpp /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 96%] Building CXX object api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -MF CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o.d -o CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/tpr.cpp [ 97%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/topology.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/topology.cpp.o -MF CMakeFiles/nblib-setup-test.dir/topology.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/topology.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/topology.cpp [ 97%] Building CXX object api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../bin/nblib-tpr-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-tpr-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-tpr-test.dir/link.d "CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o" "CMakeFiles/nblib-tpr-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-tpr-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 97%] Built target nblib-tpr-test /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integration-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integration-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-integration-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integration-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integration-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 97%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/gmxcalculator.cpp [ 97%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/virials.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/simstate.cpp.o -MF CMakeFiles/nblib-integration-test.dir/simstate.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/simstate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests/simstate.cpp [ 97%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../bin/nblib-integration-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integration-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-setup-test.dir/link.d "CMakeFiles/nblib-setup-test.dir/box.cpp.o" "CMakeFiles/nblib-setup-test.dir/interactions.cpp.o" "CMakeFiles/nblib-setup-test.dir/particletype.cpp.o" "CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o" "CMakeFiles/nblib-setup-test.dir/molecules.cpp.o" "CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o" "CMakeFiles/nblib-setup-test.dir/topology.cpp.o" "CMakeFiles/nblib-setup-test.dir/virials.cpp.o" "CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-setup-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 97%] Built target nblib-setup-test /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/bondtypes.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/gmxcalculator.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-integration-test.dir/link.d "CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-integration-test.dir/nbkernelsystem.cpp.o" "CMakeFiles/nblib-integration-test.dir/simstate.cpp.o" "CMakeFiles/nblib-integration-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-integration-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target nblib-integration-test [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/helpers.cpp /usr/bin/gmake -f api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build.make api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/util/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build.make api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/setup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/util/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/util/tests/setup.cpp [ 98%] Building CXX object api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/traits.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/util/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/traits.cpp.o -MF CMakeFiles/nblib-util-test.dir/traits.cpp.o.d -o CMakeFiles/nblib-util-test.dir/traits.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/util/tests/traits.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o.d -o 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/util/tests/CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/nblib-util-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/util/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-util-test.dir/link.txt --verbose=1 [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/kernels.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/typetests.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-util-test.dir/link.d "CMakeFiles/nblib-util-test.dir/setup.cpp.o" "CMakeFiles/nblib-util-test.dir/traits.cpp.o" "CMakeFiles/nblib-util-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-util-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target nblib-util-test /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock 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CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/calculator.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -MF CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/conversions.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/shiftforces.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o -MF CMakeFiles/commandline-test.dir/filenm.cpp.o.d -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o -MF CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o.d -o CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/listed_forces/tests/transformations.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o -MF CMakeFiles/commandline-test.dir/pargs.cpp.o.d -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/tests -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -MF 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/nblib-listed-forces-test.dir/link.d "CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-listed-forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target nblib-listed-forces-test /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -MF CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/commandline-test.dir/link.d "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target commandline-test /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrunutility-mpi-test.dir/link.d "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target mdrunutility-mpi-test /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -MF CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o.d -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests/analysisdata.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/mdrunutility-test.dir/link.d "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Built target mdrunutility-test /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests/histogram.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/gyrate.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/hbond.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/msd.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/analysisdata-test.dir/link.d "CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o" "CMakeFiles/analysisdata-test.dir/arraydata.cpp.o" "CMakeFiles/analysisdata-test.dir/average.cpp.o" "CMakeFiles/analysisdata-test.dir/histogram.cpp.o" "CMakeFiles/analysisdata-test.dir/lifetime.cpp.o" "CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/analysisdata-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.10.0.0 -lm /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target analysisdata-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/pairdist.cpp /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/nblib /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib-tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib-tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build' [100%] Built target nblib-tests [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/rdf.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/sasa.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects 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Passed 0.08 sec Start 26: NbnxmTests 28/93 Test #21: PlumedAppliedForcesUnitTests .............. Passed 0.44 sec Start 27: NbnxmGpuTests 29/93 Test #27: NbnxmGpuTests ............................. Passed 0.02 sec Start 28: CommandLineUnitTests 30/93 Test #28: CommandLineUnitTests ...................... Passed 0.03 sec Start 29: DomDecTests 31/93 Test #29: DomDecTests ............................... Passed 0.02 sec Start 31: EwaldUnitTests 32/93 Test #26: NbnxmTests ................................ Passed 0.48 sec Start 32: FFTUnitTests 33/93 Test #32: FFTUnitTests .............................. Passed 0.09 sec Start 33: GpuUtilsUnitTests 34/93 Test #31: EwaldUnitTests ............................ Passed 0.27 sec Start 34: HardwareUnitTests 35/93 Test #33: GpuUtilsUnitTests ......................... Passed 0.03 sec Start 35: MathUnitTests 36/93 Test #34: HardwareUnitTests ......................... Passed 0.06 sec Start 36: MdrunUtilityUnitTests 37/93 Test #36: MdrunUtilityUnitTests ..................... Passed 0.04 sec Start 38: MDSpanTests 38/93 Test #35: MathUnitTests ............................. Passed 0.11 sec Start 39: MdtypesUnitTest 39/93 Test #38: MDSpanTests ............................... Passed 0.03 sec Start 40: OnlineHelpUnitTests 40/93 Test #39: MdtypesUnitTest ........................... Passed 0.03 sec Start 41: OptionsUnitTests 41/93 Test #40: OnlineHelpUnitTests ....................... Passed 0.04 sec Start 42: PbcutilUnitTest 42/93 Test #41: OptionsUnitTests .......................... Passed 0.05 sec Start 43: RandomUnitTests 43/93 Test #42: PbcutilUnitTest ........................... Passed 0.03 sec Start 44: RestraintTests 44/93 Test #44: RestraintTests ............................ Passed 0.02 sec Start 45: TableUnitTests 45/93 Test #43: RandomUnitTests ........................... Passed 0.04 sec Start 46: TaskAssignmentUnitTests 46/93 Test #46: TaskAssignmentUnitTests ................... Passed 0.03 sec Start 47: GmxTimingTests 47/93 Test #47: GmxTimingTests ............................ Passed 0.02 sec Start 48: TopologyTest 48/93 Test #45: TableUnitTests ............................ Passed 0.07 sec Start 49: PullTest 49/93 Test #49: PullTest .................................. Passed 0.04 sec Start 50: SimdUnitTests 50/93 Test #48: TopologyTest .............................. Passed 0.08 sec Start 51: CompatibilityHelpersTests 51/93 Test #50: SimdUnitTests ............................. Passed 0.04 sec Start 52: GmxAnaTest 52/93 Test #51: CompatibilityHelpersTests ................. Passed 0.02 sec Start 53: GmxPreprocessTests 53/93 Test #52: GmxAnaTest ................................ Passed 1.00 sec Start 54: Pdb2gmx1Test 54/93 Test #53: GmxPreprocessTests ........................ Passed 1.44 sec Start 55: Pdb2gmx2Test 55/93 Test #54: Pdb2gmx1Test .............................. Passed 0.97 sec Start 56: Pdb2gmx3Test 56/93 Test #55: Pdb2gmx2Test .............................. Passed 1.38 sec Start 57: CorrelationsTest 57/93 Test #57: CorrelationsTest .......................... Passed 0.17 sec Start 58: AnalysisDataUnitTests 58/93 Test #58: AnalysisDataUnitTests ..................... Passed 0.04 sec Start 59: CoordinateIOTests 59/93 Test #59: CoordinateIOTests ......................... Passed 0.07 sec Start 60: TrajectoryAnalysisUnitTests 60/93 Test #56: Pdb2gmx3Test .............................. Passed 1.82 sec Start 61: EnergyAnalysisUnitTests 61/93 Test #61: EnergyAnalysisUnitTests ................... Passed 0.10 sec Start 62: ToolUnitTests 62/93 Test #62: ToolUnitTests ............................. Passed 2.34 sec Start 63: ToolWithLeaksUnitTests 63/93 Test #63: ToolWithLeaksUnitTests .................... Passed 0.66 sec Start 64: FileIOTests 64/93 Test #64: FileIOTests ............................... Passed 0.05 sec Start 65: SelectionUnitTests 65/93 Test #65: SelectionUnitTests ........................ Passed 0.18 sec Start 75: MdrunTpiTests 66/93 Test #75: MdrunTpiTests ............................. Passed 0.99 sec 67/93 Test #60: TrajectoryAnalysisUnitTests ............... Passed 7.47 sec Start 1: GmxapiExternalInterfaceTests 68/93 Test #1: GmxapiExternalInterfaceTests .............. Passed 1.99 sec Start 2: GmxapiInternalInterfaceTests 69/93 Test #2: GmxapiInternalInterfaceTests .............. Passed 0.69 sec Start 12: TestUtilsMpiUnitTests 70/93 Test #12: TestUtilsMpiUnitTests ..................... Passed 0.02 sec Start 14: UtilityMpiUnitTests 71/93 Test #14: UtilityMpiUnitTests ....................... Passed 0.02 sec Start 30: DomDecMpiTests 72/93 Test #30: DomDecMpiTests ............................ Passed 0.05 sec Start 37: MdrunUtilityMpiUnitTests 73/93 Test #37: MdrunUtilityMpiUnitTests .................. Passed 0.45 sec Start 66: MdrunOutputTests 74/93 Test #66: MdrunOutputTests .......................... Passed 0.12 sec Start 68: MdrunIOTests 75/93 Test #68: MdrunIOTests .............................. Passed 0.12 sec Start 70: MdrunTestsTwoRanks 76/93 Test #70: MdrunTestsTwoRanks ........................ Passed 2.47 sec Start 71: MdrunSingleRankAlgorithmsTests 77/93 Test #71: MdrunSingleRankAlgorithmsTests ............ Passed 1.11 sec Start 73: Minimize2RankTests 78/93 Test #73: Minimize2RankTests ........................ Passed 1.07 sec Start 74: MdrunNonIntegratorTests 79/93 Test #74: MdrunNonIntegratorTests ................... Passed 0.04 sec Start 76: MdrunMpiTests 80/93 Test #76: MdrunMpiTests ............................. Passed 0.41 sec Start 77: MdrunMultiSimTests 81/93 Test #77: MdrunMultiSimTests ........................ Passed 0.02 sec Start 78: MdrunMultiSimReplexTests 82/93 Test #78: MdrunMultiSimReplexTests .................. Passed 0.02 sec Start 79: MdrunMultiSimReplexEquivalenceTests 83/93 Test #79: MdrunMultiSimReplexEquivalenceTests ....... Passed 0.02 sec Start 81: MdrunMpi2RankPmeTests 84/93 Test #81: MdrunMpi2RankPmeTests ..................... Passed 1.20 sec Start 83: MdrunCoordinationBasicTests2Ranks 85/93 Test #83: MdrunCoordinationBasicTests2Ranks ......... Passed 0.02 sec Start 85: MdrunCoordinationCouplingTests2Ranks 86/93 Test #85: MdrunCoordinationCouplingTests2Ranks ...... Passed 0.02 sec Start 87: MdrunCoordinationConstraintsTests2Ranks 87/93 Test #87: MdrunCoordinationConstraintsTests2Ranks ... Passed 0.02 sec Start 88: MdrunFEPTests 88/93 Test #88: MdrunFEPTests ............................. Passed 0.07 sec Start 89: MdrunPullTests 89/93 Test #89: MdrunPullTests ............................ Passed 1.36 sec Start 90: MdrunRotationTests 90/93 Test #90: MdrunRotationTests ........................ Passed 0.13 sec Start 91: MdrunSimulatorComparison 91/93 Test #91: MdrunSimulatorComparison .................. Passed 0.03 sec Start 92: MdrunVirtualSiteTests 92/93 Test #92: MdrunVirtualSiteTests ..................... Passed 11.26 sec Start 93: regressiontests/essentialdynamics 93/93 Test #93: regressiontests/essentialdynamics ......... Passed 2.32 sec 100% tests passed, 0 tests failed out of 93 Label Time Summary: GTest = 88.82 sec*proc (90 tests) IntegrationTest = 66.37 sec*proc (29 tests) MpiTest = 53.77 sec*proc (21 tests) QuickGpuTest = 42.82 sec*proc (23 tests) SlowGpuTest = 26.09 sec*proc (15 tests) SlowTest = 16.35 sec*proc (14 tests) UnitTest = 6.10 sec*proc (47 tests) Total Test time (real) = 42.42 sec + [[ '' = openmpi ]] ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich ~/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 + pushd mpich + [[ mpich = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j2 --verbose --target tests Change Dir: '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 tests /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 tests gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -B/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/CMakeFiles 88 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' Consolidate compiler generated dependencies of target mdrun_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/src/gtest-all.cc [ 0%] Built target mdrun_objlib /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target energyanalysis gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 0%] Built target energyanalysis /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Built target clFFT /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.14 -D PROJECT_VERSION=2025.3-Fedora44 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora44 -P /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Built target release-version-info /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/DependInfo.cmake "--color=" Dependencies file "src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/compiler_depend.internal". Dependencies file "src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/compiler_depend.internal". Dependencies file "src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/compiler_depend.internal". Dependencies file "src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_stdio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target internal_rpc_xdr gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build.make src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Built target internal_rpc_xdr /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target thread_mpi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 1%] Built target thread_mpi /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abmd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_opes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_torchann.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 4%] Built target colvars_objlib /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target linearalgebra gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 4%] Built target linearalgebra /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target options gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 5%] Built target options /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 5%] Built target pulling /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target scanner gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 5%] Built target scanner /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". 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Consolidate compiler generated dependencies of target taskassignment gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 5%] Built target taskassignment /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 6%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_zones.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/hip_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 63%] Built target libgromacs [ 63%] Linking CXX static library ../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 63%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 63%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_LANG_CXX11 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -MD -MT src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/src/gmock-all.cc [ 63%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a "CMakeFiles/gmock.dir/src/gmock-all.cc.o" /usr/bin/ranlib 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/testutils-mpi-test.dir/link.d "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 68%] Built target testutils-mpi-test /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o -MF CMakeFiles/utility-test.dir/alignedallocator.cpp.o.d -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/alignedallocator.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o -MF CMakeFiles/utility-test.dir/arrayref.cpp.o.d -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/arrayref.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/testutils-test.dir/link.d "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/naming.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a ../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../lib/libtestutils.a ../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../lib/libgmock.a ../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 68%] Built target testutils-test /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -MF CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o.d -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o -MF CMakeFiles/utility-test.dir/bitmask32.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/bitmask32.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/bitmask64.cpp [ 68%] Building CXX object 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/bitmask128.cpp [ 68%] Building CXX object 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/cstringutil.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/utility-mpi-test.dir/link.d "CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o" "CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 68%] Built target utility-mpi-test /usr/bin/gmake -f src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/build.make src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/build.make 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxlib/nonbonded/tests/nb_free_energy.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -MF CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o.d -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/enumerationhelpers.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxlib/nonbonded/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 68%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -MF CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o.d -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o -MF CMakeFiles/utility-test.dir/logger.cpp.o.d -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/logger.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o -MF CMakeFiles/utility-test.dir/path.cpp.o.d -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/path.cpp [ 69%] Building CXX object 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -MF CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o.d -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 69%] Building CXX object 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/range.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/scope_guard.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/scope_guard.cpp.o -MF CMakeFiles/utility-test.dir/scope_guard.cpp.o.d -o CMakeFiles/utility-test.dir/scope_guard.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/scope_guard.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/strconvert.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -MF CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o.d -o CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o -MF CMakeFiles/utility-test.dir/stringutil.cpp.o.d -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/stringutil.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/template_mp.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o -MF CMakeFiles/utility-test.dir/textreader.cpp.o.d -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/textreader.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/tests/textwriter.cpp [ 69%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 69%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 69%] Built target nonbonded-fep-test /usr/bin/gmake -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests 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[ 69%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o -MF CMakeFiles/mdlib-test.dir/calcvir.cpp.o.d -o CMakeFiles/mdlib-test.dir/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/calcvir.cpp [ 69%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/constr.cpp [ 69%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -MF CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o.d -o CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/energydrifttracker.cpp [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -MF CMakeFiles/mdlib-test.dir/energyoutput.cpp.o.d -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/energyoutput.cpp [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/utility-test.dir/link.d "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 70%] Built target utility-test [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -MF CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o.d -o CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o -c 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o -MF CMakeFiles/awh-test.dir/awh_setup.cpp.o.d -o CMakeFiles/awh-test.dir/awh_setup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/awh_setup.cpp [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevin.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevin.cpp.o -MF CMakeFiles/mdlib-test.dir/langevin.cpp.o.d -o CMakeFiles/mdlib-test.dir/langevin.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/langevin.cpp [ 70%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o -MF CMakeFiles/awh-test.dir/bias.cpp.o.d -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/bias.cpp [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevintestdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevintestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/langevintestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/langevintestdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/langevintestdata.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o -MF CMakeFiles/awh-test.dir/biasgrid.cpp.o.d -o CMakeFiles/awh-test.dir/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevintestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/langevintestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/langevintestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/langevintestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/langevintestrunners.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o -MF CMakeFiles/awh-test.dir/biassharing.cpp.o.d -o CMakeFiles/awh-test.dir/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/biassharing.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrog.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/leapfrog.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o -MF CMakeFiles/awh-test.dir/biasstate.cpp.o.d -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/biasstate.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 71%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/settle.cpp [ 71%] Linking CXX executable ../../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/settletestrunners.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o -MF CMakeFiles/mdlib-test.dir/shake.cpp.o.d -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/shake.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o -MF CMakeFiles/mdlib-test.dir/updategroups.cpp.o.d -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/updategroups.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -MF CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o.d -o CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdlib/tests/wholemoleculetransform.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/awh-test.dir/link.d "CMakeFiles/awh-test.dir/awh_setup.cpp.o" "CMakeFiles/awh-test.dir/bias.cpp.o" "CMakeFiles/awh-test.dir/biasgrid.cpp.o" "CMakeFiles/awh-test.dir/biassharing.cpp.o" "CMakeFiles/awh-test.dir/biasstate.cpp.o" "CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o" "CMakeFiles/awh-test.dir/friction_metric.cpp.o" "CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/awh-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 72%] Built target awh-test /usr/bin/gmake -f src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/build.make src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingforceprovider.cpp [ 72%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [ 72%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 72%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdlib-test.dir/link.d "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/langevin.cpp.o" "CMakeFiles/mdlib-test.dir/langevintestdata.cpp.o" "CMakeFiles/mdlib-test.dir/langevintestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 72%] Built target mdlib-test /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build.make src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 72%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/density_fitting_applied_forces-test.dir/link.d "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 72%] Built target density_fitting_applied_forces-test [ 72%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmtopologypreprocessor.cpp /usr/bin/gmake -f src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/build.make src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 72%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [ 72%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvarsoptions.cpp [ 72%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/qmmm/tests/qmmmforceprovider.cpp [ 72%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI 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src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/colvars/tests/colvarsforceprovider.cpp [ 73%] Linking CXX executable ../../../../../bin/qmmm_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 [ 73%] Building CXX object src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/colvars/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/qmmm_applied_forces-test.dir/link.d "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 73%] Built target qmmm_applied_forces-test /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 73%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o -MF CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o.d -o CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumedOptions.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/colvars_applied_forces-test.dir/link.d "CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o" "CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/colvars_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 73%] Built target colvars_applied_forces-test /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build.make src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 73%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o -MF CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o.d -o CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumed_md_test.cpp [ 73%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../../../bin/plumed_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/plumed_applied_forces-test.dir/link.txt --verbose=1 [ 73%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o -MF CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o.d -o CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/plumed/tests/plumedTestUtils.cpp [ 73%] Building CXX object src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/plumed/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../../bin/plumed_md-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/plumed/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/plumed_md-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/plumed_applied_forces-test.dir/link.d "CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o" "CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/plumed_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Built target plumed_applied_forces-test /usr/bin/gmake -f src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build.make src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build.make src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests/nnpot.cpp [ 75%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests/nnpotoptions.cpp [ 75%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/nnpot/tests/nnpottopologypreprocessor.cpp [ 75%] Building CXX object src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../../bin/nnpot_applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/nnpot/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nnpot_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/nnpot_applied_forces-test.dir/link.d "CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o" "CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nnpot_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Built target nnpot_applied_forces-test /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -MF CMakeFiles/applied_forces-test.dir/electricfield.cpp.o.d -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/applied_forces/tests/electricfield.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/applied_forces-test.dir/link.d "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Built target applied_forces-test /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests/bonded.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o -MF CMakeFiles/listed_forces-test.dir/pairs.cpp.o.d -o CMakeFiles/listed_forces-test.dir/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests/pairs.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -MF CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o.d -o CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/listed_forces/tests/position_restraints.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/listed_forces-test.dir/link.d "CMakeFiles/listed_forces-test.dir/bonded.cpp.o" "CMakeFiles/listed_forces-test.dir/pairs.cpp.o" "CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o" "CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/listed_forces-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Built target listed_forces-test /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 75%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/exclusions.cpp [ 75%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/kernel_test.cpp [ 76%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 76%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o -MF CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o.d -o CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/simd_energy_accumulator.cpp [ 76%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o -MF CMakeFiles/nbnxm-test.dir/testsystem.cpp.o.d -o CMakeFiles/nbnxm-test.dir/testsystem.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/testsystem.cpp [ 76%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/plumed_md-test.dir/link.d "CMakeFiles/plumed_md-test.dir/plumed_md_test.cpp.o" "CMakeFiles/plumed_md-test.dir/plumedTestUtils.cpp.o" "CMakeFiles/plumed_md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/plumed_md-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a ../../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../../lib/libmdrun_test_infrastructure.a -ldl ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../../lib/libgmock.a ../../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Built target plumed_md-test /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o -MF CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o.d -o CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/nbnxm/tests/pairlist.cpp [ 76%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/nbnxm-gpu-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-gpu-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/nbnxm-gpu-test.dir/link.d "CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o" "CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-gpu-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Built target nbnxm-gpu-test /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 76%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a "CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o" "CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Built target onlinehelp-test-shared /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o -MF CMakeFiles/domdec-test.dir/hashedmap.cpp.o.d -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests/hashedmap.cpp [ 76%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -MF CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o.d -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 76%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/domdec-test.dir/link.d "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Built target domdec-test /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 76%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp [ 77%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/domdec-mpi-test.dir/link.d "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Built target domdec-mpi-test /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -MF CMakeFiles/ewald-test.dir/pmegathertest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmegathertest.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmesolvetest.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/ewald/tests/pme.cpp [ 77%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fft/tests/fft.cpp [ 77%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 [ 77%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fft/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/fft-test.dir/link.d "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Built target fft-test /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_availability.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_stream_manager.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -MF CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/pinnedmemorychecker.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -MF CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/device_buffer.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/ewald-test.dir/link.d "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Built target ewald-test [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 77%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -MF CMakeFiles/hardware-test.dir/cpuinfo.cpp.o.d -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/cpuinfo.cpp [ 77%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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/usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/hardware/tests/device_management.cpp [ 78%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 [ 78%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/hardware-test.dir/link.d "CMakeFiles/hardware-test.dir/cpuinfo.cpp.o" "CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o" "CMakeFiles/hardware-test.dir/device_management.cpp.o" "CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/hardware-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 78%] Built target hardware-test /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/arrayrefwithpadding.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gpu_utils-test.dir/link.d "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 78%] Built target gpu_utils-test /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 78%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 78%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 78%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd 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src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/coordinatetransformation.cpp [ 78%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o -MF CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdspan/tests/extents.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o -MF CMakeFiles/mdspan-test.dir/extensions.cpp.o.d -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdspan/tests/extensions.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/densityfit.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o -MF CMakeFiles/mdspan-test.dir/layouts.cpp.o.d -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdspan/tests/layouts.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o -MF CMakeFiles/mdspan-test.dir/mdspan.cpp.o.d -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdspan/tests/mdspan.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o -MF CMakeFiles/math-test.dir/dofit.cpp.o.d -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/dofit.cpp [ 79%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -MF CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 79%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include 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-MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/gausstransform.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include 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src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o -MF CMakeFiles/math-test.dir/densityfittingforce.cpp.o.d -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/densityfittingforce.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdspan-test.dir/link.d "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 80%] Built target mdspan-test [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/enerdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/enerdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/enerdata.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -MF CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o.d -o CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/observablesreducer.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o -MF CMakeFiles/math-test.dir/optimization.cpp.o.d -o CMakeFiles/math-test.dir/optimization.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/optimization.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o -MF CMakeFiles/math-test.dir/paddedvector.cpp.o.d -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/paddedvector.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -MF CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o.d -o CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/checkpointdata.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -MF CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o.d -o CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/forcebuffers.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -MF CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o.d -o CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/mdtypes/tests/multipletimestepping.cpp [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o -MF CMakeFiles/math-test.dir/vectypes.cpp.o.d -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/tests/vectypes.cpp [ 80%] Building CXX object src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdtypes/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 [ 80%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdtypes-test.dir/link.d "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 80%] Built target mdtypes-test /usr/bin/gmake -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpformat.cpp [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/math-test.dir/link.d "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/complex.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 81%] Built target math-test /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/abstractoptionstorage.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/filenameoption.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/filenameoptionmanager.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/onlinehelp-test.dir/link.d "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 81%] Built target onlinehelp-test /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o -MF CMakeFiles/pbcutil-test.dir/com.cpp.o.d -o CMakeFiles/pbcutil-test.dir/com.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/com.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o -MF CMakeFiles/options-test.dir/option.cpp.o.d -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/option.cpp [ 81%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o -MF CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/options/tests/optionsassigner.cpp [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o -MF CMakeFiles/pbcutil-test.dir/mshift.cpp.o.d -o CMakeFiles/pbcutil-test.dir/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/mshift.cpp [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pbcutil/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o -MF CMakeFiles/pbcutil-test.dir/pbc.cpp.o.d -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pbcutil/tests/pbc.cpp [ 81%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd 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-DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags 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/usr/bin/gmake -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests/gammadistribution.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -MF CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o.d -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/random/tests/uniformrealdistribution.cpp [ 82%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/options-test.dir/link.d "CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o" "CMakeFiles/options-test.dir/filenameoption.cpp.o" "CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o" "CMakeFiles/options-test.dir/option.cpp.o" "CMakeFiles/options-test.dir/optionsassigner.cpp.o" "CMakeFiles/options-test.dir/repeatingsection.cpp.o" "CMakeFiles/options-test.dir/timeunitmanager.cpp.o" "CMakeFiles/options-test.dir/treesupport.cpp.o" "CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/options-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Built target options-test /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o -MF CMakeFiles/restraintpotential-test.dir/manager.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/restraint/tests/manager.cpp [ 82%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/random-test.dir/link.d "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Built target random-test /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o -MF CMakeFiles/table-test.dir/splinetable.cpp.o.d -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tables/tests/splinetable.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/restraintpotential-test.dir/link.d "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Built target restraintpotential-test /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 82%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/tests/usergpuids.cpp [ 82%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 [ 84%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/table-test.dir/link.d "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Built target table-test /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests/CMakeFiles/timing-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build.make src/gromacs/timing/tests/CMakeFiles/timing-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o -MF CMakeFiles/timing-test.dir/timing.cpp.o.d -o CMakeFiles/timing-test.dir/timing.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/tests/timing.cpp [ 84%] Building CXX object src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/timing/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/taskassignment-test.dir/link.d "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Built target taskassignment-test /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o -MF CMakeFiles/topology-test.dir/atoms.cpp.o.d -o CMakeFiles/topology-test.dir/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/atoms.cpp [ 84%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -MF CMakeFiles/topology-test.dir/exclusionblocks.cpp.o.d -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/exclusionblocks.cpp [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/idef.cpp [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/index.cpp [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o -MF CMakeFiles/topology-test.dir/mtop.cpp.o.d -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/mtop.cpp [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/tests/symtab.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/timing-test.dir/link.d "CMakeFiles/timing-test.dir/timing.cpp.o" "CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/timing-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Built target timing-test [ 84%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o -MF CMakeFiles/pull-test.dir/pull.cpp.o.d -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/tests/pull.cpp [ 84%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 [ 84%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/pull-test.dir/link.d "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Built target pull-test /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/base.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -MF CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o.d -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o -MF CMakeFiles/simd-test.dir/scalar.cpp.o.d -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/scalar.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/topology-test.dir/link.d "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 85%] Built target topology-test /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/compat/tests 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/compat/tests/mp11.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o -MF CMakeFiles/compat-test.dir/pointers.cpp.o.d -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/compat/tests/pointers.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -MF CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o.d -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o -MF CMakeFiles/simd-test.dir/simd_integer.cpp.o.d -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_integer.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -MF CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/istream:43, from /usr/include/c++/15/sstream:42, from /usr/include/c++/15/bits/quoted_string.h:40, from /usr/include/c++/15/iomanip:55, from /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:45: In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:410:86: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘maxUlpDiffPos’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:294:23: note: ‘maxUlpDiffPos’ was declared here 294 | real maxUlpDiffPos; | ^~~~~~~~~~~~~ In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:412:63: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘refValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:295:23: note: ‘refValMaxUlpDiff’ was declared here 295 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~ In function ‘std::basic_ostream >::_S_cast_flt(float)double’, inlined from ‘std::basic_ostream >::operator<<(float)’ at /usr/include/c++/15/bits/ostream.h:239:18, inlined from ‘testing::Message::operator<< (float const&)testing::Message&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-message.h:132:10, inlined from ‘testing::AssertionResult::operator<< (float const&)testing::AssertionResult&’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include/gtest/gtest-assertion-result.h:192:29, inlined from ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’ at /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:413:63: /usr/include/c++/15/bits/ostream.h:486:15: warning: ‘simdValMaxUlpDiff’ may be used uninitialized [-Wmaybe-uninitialized] 486 | _To __d = static_cast<_To>(__f); | ^~~ /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘gmx::test::SimdMathTest::compareSimdMathFunction(char const*, char const*, char const*, float (*)(float), gmx::SimdFloat (*)(gmx::SimdFloat), gmx::test::SimdMathTest::CompareSettings const&)’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_math.cpp:295:41: note: ‘simdValMaxUlpDiff’ was declared here 295 | real refValMaxUlpDiff, simdValMaxUlpDiff; | ^~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o -MF CMakeFiles/simd-test.dir/simd_memory.cpp.o.d -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_memory.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd_vector_operations.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o -MF CMakeFiles/simd-test.dir/simd4.cpp.o.d -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/compat-test.dir/link.d "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 85%] Built target compat-test /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -MF CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_chi.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_math.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxana/tests/gmx_traj.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/simd-test.dir/link.d "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 85%] Built target simd-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/convparm.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genion.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/genrestr.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gen_maxwell_velocities.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem 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-Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmxana-test.dir/link.d "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target gmxana-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/massrepartitioning.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/readir.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/pdb2gmx1-test.dir/link.d "CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx1-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target pdb2gmx1-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/pdb2gmx2-test.dir/link.d "CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx2-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target pdb2gmx2-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/gmxpreprocess-test.dir/link.d "CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target gmxpreprocess-test /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o -MF CMakeFiles/correlations-test.dir/autocorr.cpp.o.d -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -MF CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o.d -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 86%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/pdb2gmx3-test.dir/link.d "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target pdb2gmx3-test /usr/bin/gmake -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -MF CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o.d -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 86%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 86%] Built target analysisdata-test-shared /usr/bin/gmake -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -MF CMakeFiles/coordinateio-test.dir/testmodule.cpp.o.d -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/coordinateio/tests/testmodule.cpp [ 88%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/energyanalysis-test.dir/link.d "CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o" "CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o" "CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/energyanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 88%] Built target energyanalysis-test /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd 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CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o -MF CMakeFiles/tool-test.dir/helpwriting.cpp.o.d -o CMakeFiles/tool-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/helpwriting.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o -MF CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/make_ndx.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/report_methods.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/trjconv.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o -MF CMakeFiles/tool-test.dir/convert-tpr.cpp.o.d -o CMakeFiles/tool-test.dir/convert-tpr.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/convert-tpr.cpp [ 88%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/coordinateio-test.dir/link.d "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" "CMakeFiles/coordinateio-test.dir/testmodule.cpp.o" "CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/coordinateio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 88%] Built target coordinateio-test /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o -MF CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o.d -o CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/tools/tests/convert-tpr-with-leaks.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/tool-test-with-leaks cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test-with-leaks.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/tool-test.dir/link.d "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 89%] Built target tool-test-with-leaks [ 89%] Built target tool-test /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests 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gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 89%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/tests/indexutil.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/checkpoint.cpp [ 89%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o -MF CMakeFiles/fileio-test.dir/confio.cpp.o.d -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/confio.cpp [ 89%] Building CXX object 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CMakeFiles/fileio-test.dir/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/filetypes.cpp [ 90%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/matio.cpp.o -MF CMakeFiles/fileio-test.dir/matio.cpp.o.d -o CMakeFiles/fileio-test.dir/matio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/matio.cpp [ 90%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o -MF CMakeFiles/selection-test.dir/selectionoption.cpp.o.d -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/tests/selectionoption.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o -MF CMakeFiles/fileio-test.dir/xvgio.cpp.o.d -o CMakeFiles/fileio-test.dir/xvgio.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/fileio/tests/xvgio.cpp [ 90%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/fileio-test.dir/link.d "CMakeFiles/fileio-test.dir/checkpoint.cpp.o" "CMakeFiles/fileio-test.dir/confio.cpp.o" "CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/matio.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 90%] Built target fileio-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -MF CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/compressed_x_output.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -MF CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/helpwriting.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/outputfiles.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/trajectory_writing.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/selection-test.dir/link.d "CMakeFiles/selection-test.dir/indexutil.cpp.o" "CMakeFiles/selection-test.dir/nbsearch.cpp.o" "CMakeFiles/selection-test.dir/poscalc.cpp.o" "CMakeFiles/selection-test.dir/selectioncollection.cpp.o" "CMakeFiles/selection-test.dir/selectionoption.cpp.o" "CMakeFiles/selection-test.dir/toputils.cpp.o" "CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/selection-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 92%] Built target selection-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/densityfittingmodule.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/interactiveMD.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/mimic.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-output-test.dir/link.d "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 93%] Built target mdrun-output-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -MF CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/checkpoint.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -MF CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/exactcontinuation.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-modules-test.dir/link.d "CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o" "CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o" "CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 93%] Built target mdrun-modules-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests 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src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-io-test.dir/link.d "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-io-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd 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'/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/ewaldsurfaceterm.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-test.dir/link.d "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/usr/lib64/mpich/lib 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-Wl,--dependency-file=CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.d "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-single-rank-algorithms-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests 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/usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/normalmodes.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include 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/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/tpitest.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-tpi-test.dir/link.d "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-tpi-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/domain_decomposition.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-non-integrator-test.dir/link.d "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-non-integrator-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/mimic.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H 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CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem 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-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-multisim-test.dir/link.d "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-multisim-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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/usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 94%] Built target mdrun-mpi-test [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include 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-Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/replicaexchange.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include 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CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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-mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script 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../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Built target mdrun-multisim-replex-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build 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-DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/pmetest.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.d "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Built target mdrun-multisim-replex-equivalence-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_basic.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-coordination-basic-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-basic-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-mpi-pme-test.dir/link.d "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Built target mdrun-mpi-pme-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem 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-Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=CMakeFiles/mdrun-coordination-basic-test.dir/link.d "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/usr/lib64/mpich/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a ../../../../lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/x86_64-redhat-linux/15/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl ../../../../lib/libgmock.a ../../../../lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Built target mdrun-coordination-basic-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3 /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/thread_mpi/include -isystem /usr/include/mpich-x86_64 -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -msse2 -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2025.3-build/gromacs-2025.3/mpich/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 !! Copr timeout => sending INT ERROR: Build root is locked by another process. Copr build error: Build failed