Mock Version: 1.4.8
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/ncbi-blast+.spec'], chrootPath='/var/lib/mock/707920-epel-7-x86_64-1517491269.711454/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9f18f27be0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '52b3af3c36fd497aa9807010c27d1c88', '-D', '/var/lib/mock/707920-epel-7-x86_64-1517491269.711454/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/ncbi-blast+.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
warning: Could not canonicalize hostname: 52b3af3c36fd497aa9807010c27d1c88
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/ncbi-blast+-2.2.31-4.el7.centos.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/ncbi-blast+.spec'], chrootPath='/var/lib/mock/707920-epel-7-x86_64-1517491269.711454/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9f18f27be0>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1376f817a11f442ba2466b742f48b1a2', '-D', '/var/lib/mock/707920-epel-7-x86_64-1517491269.711454/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/ncbi-blast+.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ozdpxi
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ncbi-blast-2.2.31+-src
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ncbi-blast-2.2.31+-src.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ncbi-blast-2.2.31+-src
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #1 (ncbi-blast+-2.2.28-configure.patch):'
Patch #1 (ncbi-blast+-2.2.28-configure.patch):
+ /usr/bin/cat /builddir/build/SOURCES/ncbi-blast+-2.2.28-configure.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file c++/src/build-system/configure
Hunk #1 succeeded at 1611 (offset -1410 lines).
+ echo 'Patch #2 (ncbi-blast+-2.2.30-gcc5.patch):'
Patch #2 (ncbi-blast+-2.2.30-gcc5.patch):
+ /usr/bin/cat /builddir/build/SOURCES/ncbi-blast+-2.2.30-gcc5.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file c++/src/build-system/configure
patching file c++/src/build-system/configure.ac
+ find c++ -type f -name '*.h' -exec chmod -x '{}' ';'
+ find c++ -type f -name '*.hpp' -exec chmod -x '{}' ';'
+ find c++ -type f -name '*.cpp' -exec chmod -x '{}' ';'
+ rm -rf c++/src/build-system/project_tree_builder_gui/
+ rm -rf c++/src/util/compress/bzip2
+ rm -rf c++/src/util/compress/zlib
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.gEeA35
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncbi-blast-2.2.31+-src
+ export 'CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing'
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing'
+ export 'CPPFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing'
+ CPPFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing'
+ pushd c++
~/build/BUILD/ncbi-blast-2.2.31+-src/c++ ~/build/BUILD/ncbi-blast-2.2.31+-src
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ '[' 1 == 1 ']'
+ '[' x86_64 == ppc64le ']'
++ find . -name config.guess -o -name config.sub
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./src/build-system/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./src/build-system/config.guess
++ basename ./src/build-system/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./src/build-system/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './src/build-system/config.guess'
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./src/build-system/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./src/build-system/config.sub
++ basename ./src/build-system/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./src/build-system/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './src/build-system/config.sub'
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib64/ncbi-blast+ --with-build-root=BUILD --without-strip --with-symbols
configure: error: --program-prefix=:  unknown option;  use --help to show usage
configure: error: --disable-dependency-tracking:  unknown option;  use --help to show usage
configure: error: --sbindir=/usr/sbin:  unknown option;  use --help to show usage
configure: error: --sysconfdir=/etc:  unknown option;  use --help to show usage
configure: error: --datadir=/usr/share:  unknown option;  use --help to show usage
configure: error: --libexecdir=/usr/libexec:  unknown option;  use --help to show usage
configure: error: --localstatedir=/var:  unknown option;  use --help to show usage
configure: error: --sharedstatedir=/var/lib:  unknown option;  use --help to show usage
configure: error: --mandir=/usr/share/man:  unknown option;  use --help to show usage
configure: error: --infodir=/usr/share/info:  unknown option;  use --help to show usage
configure: loading site script ./src/build-system/config.site
configure: creating cache config.cache
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking for x86_64-redhat-linux-gnu-gcc... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for x86_64-redhat-linux-gnu-g++... no
checking for x86_64-redhat-linux-gnu-c++... no
checking for x86_64-redhat-linux-gnu-gpp... no
checking for x86_64-redhat-linux-gnu-aCC... no
checking for x86_64-redhat-linux-gnu-CC... no
checking for x86_64-redhat-linux-gnu-cxx... no
checking for x86_64-redhat-linux-gnu-cc++... no
checking for x86_64-redhat-linux-gnu-cl.exe... no
checking for x86_64-redhat-linux-gnu-FCC... no
checking for x86_64-redhat-linux-gnu-KCC... no
checking for x86_64-redhat-linux-gnu-RCC... no
checking for x86_64-redhat-linux-gnu-xlC_r... no
checking for x86_64-redhat-linux-gnu-xlC... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
adjusted C   compiler: /usr/bin/gcc 
adjusted C++ compiler: /usr/bin/g++ 
checking whether /usr/bin/gcc  has an option to export all symbols... -Wl,-export-dynamic
checking whether /usr/bin/gcc  supports -Wl,--{en,dis}able-new-dtags... yes
checking whether _LIBCPP_VERSION is declared... no
checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11
checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline
checking whether ln -s works... yes
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for ar... ar cr
checking ranlib's effectiveness... neutral
checking for ccache... no
checking for tail... /usr/bin/tail
checking whether /usr/bin/tail accepts modern syntax (-n N)... yes
checking for sed... /usr/bin/sed
checking for touch... /bin/touch
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking how to run /usr/bin/grep -E quietly... /usr/bin/grep -E -q
checking for valgrind... no
checking for ldd... /bin/ldd
checking whether /bin/ldd accepts -r... yes
checking how to run the C++ preprocessor... /usr/bin/g++  -std=gnu++11 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for size_t... (cached) yes
checking size of size_t... 8
checking for amq... no
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes
checking how to run the C preprocessor... /usr/bin/gcc  -std=gnu11 -fgnu89-inline -E
checking whether cross-directory hard links work... yes
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking iostream.h usability... no
checking iostream.h presence... no
checking for iostream.h... no
checking fstream usability... yes
checking fstream presence... yes
checking for fstream... yes
checking fstream.h usability... no
checking fstream.h presence... no
checking for fstream.h... no
checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking strstream.h usability... no
checking strstream.h presence... no
checking for strstream.h... no
checking strstrea.h usability... no
checking strstrea.h presence... no
checking for strstrea.h... no
checking for inttypes.h... (cached) yes
checking limits usability... yes
checking limits presence... yes
checking for limits... yes
checking for unistd.h... (cached) yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking for wstring... yes
checking for socklen_t... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking sys/epoll.h usability... yes
checking sys/epoll.h presence... yes
checking for sys/epoll.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking sys/sysinfo.h usability... yes
checking sys/sysinfo.h presence... yes
checking for sys/sysinfo.h... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking x86intrin.h usability... yes
checking x86intrin.h presence... yes
checking for x86intrin.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking paths.h usability... yes
checking paths.h presence... yes
checking for paths.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for gethostbyname_r... 6
checking for gethostbyaddr_r... 8
checking for getservbyname_r... 6
checking for getpwuid_r... 5
checking for getlogin_r... yes
checking for localtime_r... yes
checking for pthread_setconcurrency... yes
checking for pthread_atfork... yes
checking return type of localtime_r... struct
checking whether pthread mutexes are available... yes
checking for vprintf... yes
checking for _doprnt... no
checking for euidaccess... yes
checking for atoll... yes
checking for basename... yes
checking for lchown... yes
checking for fseeko... yes
checking for getgrouplist... yes
checking for getpagesize... yes
checking for getpass... yes
checking for getpassphrase... no
checking for getpwuid... yes
checking for getrusage... yes
checking for gettimeofday... yes
checking for getuid... yes
checking for memrchr... yes
checking for readpassphrase... no
checking for readv... yes
checking for usleep... yes
checking for asprintf... yes
checking for vasprintf... yes
checking for vsnprintf... yes
checking for select... yes
checking for statfs... yes
checking for statvfs... yes
checking for strcasecmp... yes
checking for strlcat... no
checking for strlcpy... no
checking for strdup... yes
checking for strndup... yes
checking for strtok_r... yes
checking for sysmp... no
checking for timegm... yes
checking for utimes... yes
checking for lutimes... yes
checking for writev... yes
checking return type of signal handlers... void
checking whether select updates the timeout when interrupted... yes
checking whether strcasecmp treats letters as lowercase... yes
checking for Linux-like sysinfo with 1 arg... yes
checking for getloadavg... yes
checking for readdir_r... 3
checking for an ANSI C-conforming const... yes
checking whether byte ordering is bigendian... no
checking whether char is unsigned... no
checking for char... yes
checking size of char... 1
checking for double... yes
checking size of double... 8
checking for float... yes
checking size of float... 4
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 8
checking for long double... yes
checking size of long double... 16
checking for long long... yes
checking size of long long... 8
checking for short... yes
checking size of short... 2
checking for void*... yes
checking size of void*... 8
checking for __int64... no
checking size of __int64... 0
checking for intptr_t... yes
checking for uintptr_t... yes
checking for struct sockaddr_in.sin_len... no
checking for struct tm.tm_zone... yes
checking for struct tm.__tm_zone... no
checking whether function prototypes can use throw(...)... yes
checking for obsolete string::compare() syntax... no
checking whether the auto_ptr template class works... yes
checking for min/max templates... yes
checking whether new C++ streams have ios_base::... yes
checking for ios(_base)::register_callback... yes
checking for std::char_traits::... yes
checking for SysV semaphores... yes
checking for union semun... no
checking which way the stack grows... down
checking whether the preprocessor supports C99-style variadic macros... yes
checking whether the preprocessor supports GNU-style variadic macros... yes
checking syntax for marking deprecated functions... __attribute__((__deprecated__))
checking how to force inlining... inline __attribute__((always_inline))
checking whether the C compiler supports __attribute__((destructor))... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary
checking whether the C compiler supports C99 restrict... __restrict__
checking whether the C++ compiler supports C99 restrict... __restrict__
checking syntax for marking functions that never return... __attribute__((__noreturn__))
checking syntax for declaring thread-local variables... __thread
checking whether FIONBIO requires BSD_COMP to be defined... no
checking whether INADDR_NONE is defined... yes
checking whether unaligned reads are permissible... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... no
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -msse4.1... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -maes... yes
checking whether in-house NCBI resources are available... no
checking for gethostbyname in -lnsl... yes
checking for connect in -lsocket... no
checking for res_search in -lresolv... yes
checking for inet_ntoa_r... no
checking for getaddrinfo... yes
checking for getnameinfo... yes
checking for freehostent... no
checking for gethostent_r... yes
checking for getipnodebyaddr... no
checking for getipnodebyname... no
checking for inet_ntop... yes
checking for erf... yes
checking for library containing kstat_open... no
checking for library containing rstat... no
checking for library containing setkey... -lcrypt
checking for library containing dlopen... -ldl
checking for library containing uuid_generate... no
checking for library containing fuse_loop... no
checking for library containing clock_gettime... none required
checking for library containing cplus_demangle... no
checking for nanosleep... yes
checking for sched_yield... yes
checking for library containing iconv... none required
checking for iconv declaration... 
       extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for libz... yes
checking for libbz2... yes
checking for libpcre... yes
checking for libgcrypt-config... /bin/libgcrypt-config
checking for libgcrypt... yes
checking for libgnutls-config... /usr/bin/libgnutls-config
checking for libgnutls... yes
checking for libssl... no
checking for krb5-config... no
checking for libgssapi_krb5... no
checking for libcurl... no
checking for reentrant Sybase libraries... no
checking for Sybase... no
checking for FreeTDS... no
checking for mysql_config... no
checking for Berkeley DB libraries... no
checking for python... /bin/python
checking for usable Python 2.7 libraries... no
checking for python2.3... no
checking for python2.4... no
checking for python2.5... no
checking for perl... /bin/perl
checking for usable Perl libraries... no
basename: missing operand
Try 'basename --help' for more information.
checking Boost version... 1_53
checking for Boost library name tag... -gcc48-mt-1_53-64 (autodetected)
checking for Boost.Regex... no
checking for Boost.Spirit... yes
checking for Boost.System... no
checking for Boost.Filesystem... no
checking for Boost.Iostreams... no
checking for Boost.Program-Options... no
checking for Boost.Test... included-only
checking for Boost.Threads... no
checking for the NCBI C toolkit... no
checking for X... no
checking for XextCreateExtension in -lXext... no
checking for XtMainLoop in -lXt... no
checking for XmuMakeAtom in -lXmu... no
checking for OpenGL... no
checking for wx-config... no
checking for wxWidgets... no
checking for FastCGI libraries... no
checking for FCGX_Accept_r... no
checking for NCBI SSS directories in /sss/BUILD... no
checking for SP directories... no
checking for ORBacus... no
checking for ICU... no
checking for libexpat... no
checking for libsablot... no
checking for libxml2... yes
checking for libxslt... yes
checking for xsltproc... /bin/xsltproc
checking for libexslt... yes
checking for Xerces-C++... no
checking for Xalan-C++... no
checking for Zorba... no
checking for libsqlite3... no
checking for liboechem... no
checking for libdrmaa... no
checking for libmuparser... no
checking for libhdf5_cpp... no
checking for libjpeg... no
checking for libpng... no
checking for libtiff... no
checking for libungif... no
checking for libgif... no
checking for libXpm... no
checking for freetype-config... no
checking for libftgl... no
checking for libmagic... no
checking for libmimetic... no
checking for soapcpp2... no
checking for wsdl2h... no
checking for libgsoapssl++... no
checking for libavrocpp... no
checking for libmongoclient... no
configure: looking for configurables below /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++...
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Building project_tree_builder
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/env_reg.cpp -o env_reg.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/metareg.cpp -o metareg.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  ncbicfg.c -o ncbicfg.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:822:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:1790) [-Wdeprecated-declarations]
             value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
                                                                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:1743:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations]
             CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */
                                                 ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:1806:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations]
             CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
                                              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:1831:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations]
             CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
                                              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:1863:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations]
             CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
                                              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag.cpp:3025:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiapp.hpp:354) [-Wdeprecated-declarations]
                 app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */
                                            ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/strsearch.cpp -o strsearch.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/logrotate.cpp -o logrotate.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/format_guess.cpp -o format_guess.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/ascii85.cpp -o ascii85.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/md5.cpp -o md5.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/md5.cpp: In member function 'void ncbi::CMD5::Finalize(unsigned char*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/md5.cpp:155:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     reinterpret_cast<Uint4*>(m_In)[14] = static_cast<Uint4>(m_Bits);
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/md5.cpp:156:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     reinterpret_cast<Uint4*>(m_In)[15] = static_cast<Uint4>(m_Bits >> 32);
                                      ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/file_obsolete.cpp -o file_obsolete.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/unicode.cpp -o unicode.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/dictionary.cpp -o dictionary.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/dictionary_util.cpp -o dictionary_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sgml_entity.cpp -o sgml_entity.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/static_set.cpp -o static_set.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/transmissionrw.cpp -o transmissionrw.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/miscmath.c -o miscmath.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/mutex_pool.cpp -o mutex_pool.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/line_reader.cpp -o line_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/util_exception.cpp -o util_exception.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/uttp.cpp -o uttp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/multi_writer.cpp -o multi_writer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/itransaction.cpp -o itransaction.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/thread_pool.cpp -o thread_pool.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/scheduler.cpp -o scheduler.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/distribution.cpp -o distribution.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/rangelist.cpp -o rangelist.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/util_misc.cpp -o util_misc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/histogram_binning.cpp -o histogram_binning.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/table_printer.cpp -o table_printer.o 
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/usr/bin/g++  -std=gnu++11  -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
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make[1]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util'
NOTE: Skipping project regexp due to unmet requirements:
LocalPCRE
make[1]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/regexp'
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make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/regexp'
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o 
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/usr/bin/g++  -std=gnu++11  -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  regexp.o arg_regexp.o mask_regexp.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -lpcre  
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make[1]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/xregexp'
/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder all
make[1]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/build-system/project_tree_builder'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o 
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/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre  -ldl -lm  -lpthread -o project_tree_builder 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f project_tree_builder /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/project_tree_builder
make[1]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/build-system/project_tree_builder'
**********************************************************************
Running project_tree_builder. Please wait.
**********************************************************************
./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ src Makefile.flat
Done
===============================================================================
NCBI C++ Toolkit documentation:
  Online:   http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
  Local:    ./doc/public/index.html
For the available configuration flags run:  ./configure --help
CFLAGS   = -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC
CXXFLAGS = -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC
CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE
LDFLAGS  =  -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O
LIBRARIES:  build as dynamic by default
FEATURES:   GCC MT LFS DLL DLL_BUILD unix WinMain Linux
PACKAGES:
  enabled:  Z BZ2 PCRE GCRYPT GNUTLS Boost.Spirit Boost.Test.Included LIBXML LIBXSLT LIBEXSLT
  disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO MONGODB
PROJECTS:
  enabled:  cgi serial objects app algo 
  disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench
Tools / flags / paths:  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.mk
Configuration  header:  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc/ncbiconf_unix.h
To build everything:  cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build && make all_r
or simply run make in the current directory
Alternatively, cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build && make -f Makefile.flat
******* CONFIGURATION SUCCESSFUL *******
+ popd
~/build/BUILD/ncbi-blast-2.2.31+-src
+ pushd c++/BUILD/build
~/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build ~/build/BUILD/ncbi-blast-2.2.31+-src
+ make -f Makefile.flat 'all_projects=algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/' -j2
/usr/bin/make -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET=
make[1]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build'
cd corelib/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
cd serial/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
/usr/bin/make[2] (Makefile.serial.lib): Nothing to be done for `export-headers'.
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
/usr/bin/make[2] (Makefile.cserial.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'.
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
/usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
cd util/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util'
/usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util'
cd serial/datatool/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
cd algo/blast/composition_adjustment/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
cd util/creaders/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
/usr/bin/make[2] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
cd objtools/blast/seqdb_reader/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.creaders.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
cd objtools/seqmasks_io/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/make[2] (Makefile.seqdb.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
cd util/sequtil/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
cd util/tables/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
/usr/bin/make[2] (Makefile.sequtil.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
cd algo/blast/dbindex/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.tables.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
cd algo/dustmask/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
/usr/bin/make[2] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
cd algo/winmask/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
/usr/bin/make[2] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
cd connect/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
cd objmgr/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
/usr/bin/make[2] (Makefile.connect.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.objmgr.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
cd objtools/readers/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.connssl.lib): Nothing to be done for `export-headers'.
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
/usr/bin/make[2] (Makefile.xobjread.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.xconnect.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
cd objmgr/util/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
/usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
cd algo/blast/api/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
/usr/bin/make[2] (Makefile.xblast.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
cd objtools/blast/services/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
/usr/bin/make[2] (Makefile.blast_services.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
cd objtools/blast/gene_info_reader/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/make[2] (Makefile.gene_info.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
cd util/compress/api/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
cd objtools/data_loaders/genbank/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make[2] (Makefile.compress.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'.
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/usr/bin/make[2] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/make[2] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
cd objtools/alnmgr/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
cd cgi/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
/usr/bin/make[2] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
cd html/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.cgi.lib): Nothing to be done for `export-headers'.
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
/usr/bin/make[2] (Makefile.fcgi.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.html.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
cd objtools/align_format/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
/usr/bin/make[2] (Makefile.align_format.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
cd objtools/blast/blastdb_format/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
/usr/bin/make[2] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
cd objtools/data_loaders/blastdb/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make[2] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
cd algo/blast/blastinput/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'.
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/make[2] (Makefile.blastinput.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
cd corelib/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
cd algo/blast/format/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `all'.
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
cd util/xregexp/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/xregexp'
/usr/bin/make[2] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
cd objtools/cleanup/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
/usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/xregexp'
cd objtools/format/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
/usr/bin/make[2] (Makefile.cleanup.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
cd algo/blast/core/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make[2] (Makefile.xformat.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
cd connect/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=connect UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
/usr/bin/make[2] (Makefile.blast.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connect to make__connect_common per /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/.#lock-map.
cd algo/blast/igblast/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o 
/usr/bin/make[2] (Makefile.igblast.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make[2] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'.
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o 
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd objtools/simple/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
/usr/bin/make[2] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
cd app/blast/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast -w -j --jobserver-fds=3,4 all
make[4]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/legacy_blast.pl /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/legacy_blast.pl /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/legacy_blast.pl
make[4]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast -w -j --jobserver-fds=3,4 all
make[4]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/update_blastdb.pl /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/update_blastdb.pl /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/update_blastdb.pl
make[4]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make[2] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd objtools/blast/seqdb_writer/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/make[2] (Makefile.writedb.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
cd app/blastdb/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/dustmasker/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
cd algo/segmask/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
/usr/bin/make[2] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
cd app/segmasker/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
cd app/winmasker/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all
make[4]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/windowmasker_2.2.22_adapter.py
make[4]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
cd objmgr/split/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
/usr/bin/make[2] (Makefile.id2_split.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
cd objtools/align_format/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
cd objtools/blast/services/unit_test/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
make[2]: Nothing to be done for `sources'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
cd corelib/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
/usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `all'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/corelib'
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o 
cd serial/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=serial UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o 
/bin/rm -f libconnect.so .libconnect.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -lnsl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libconnect.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libconnect.so
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/stltypes.cpp -o stltypes.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/memberid.cpp -o memberid.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/memberlist.cpp -o memberlist.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/item.cpp -o item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/classinfob.cpp -o classinfob.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/member.cpp -o member.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/classinfo.cpp -o classinfo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/variant.cpp -o variant.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/choice.cpp -o choice.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistr.cpp -o objistr.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objostr.cpp -o objostr.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objcopy.cpp -o objcopy.o 
cd util/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=util UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util'
/usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `all'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util'
cd algo/blast/composition_adjustment/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function]
 s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n)
 ^
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/iterator.cpp -o iterator.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function]
 s_AlignmentsAreSorted(BlastCompo_Alignment * alignments)
 ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function]
 s_DistinctAlignmentsLength(BlastCompo_Alignment * list) 
 ^
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o 
/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libcomposition_adjustment.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libcomposition_adjustment.so
/bin/ln -f .composition_adjustment.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.composition_adjustment.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/composition_adjustment'
cd util/creaders/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/creaders/alnread.c -o alnread.o 
/bin/rm -f libcreaders.so .libcreaders.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  alnread.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libcreaders.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libcreaders.so
/bin/ln -f .creaders.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.creaders.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/creaders'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/serial.cpp -o serial.o 
cd util/sequtil/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/pack_string.cpp -o pack_string.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/exception.cpp -o exception.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objhook.cpp -o objhook.o 
/bin/rm -f libsequtil.so .libsequtil.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libsequtil.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libsequtil.so
/bin/ln -f .sequtil.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.sequtil.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/sequtil'
cd util/tables/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=tables UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o 
/bin/rm -f libtables.so .libtables.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  raw_scoremat.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libtables.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libtables.so
/bin/ln -f .tables.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.tables.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/tables'
cd connect/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/.#lock-map.
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrxml.cpp: In member function 'virtual std::string ncbi::CObjectIStreamXml::ReadFileHeader()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrxml.cpp:583:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable]
                     CTempString docType = ReadName(SkipWS());
                                 ^
/bin/rm -f libxconnect.so .libxconnect.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -lnsl -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxconnect.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxconnect.so
/bin/ln -f .xconnect.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xconnect.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/connect'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o 
cd objtools/blast/gene_info_reader/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/serializable.cpp -o serializable.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/serialobject.cpp -o serialobject.o 
/bin/rm -f libgene_info.so .libgene_info.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  gene_info.o gene_info_reader.o file_utils.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libgene_info.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libgene_info.so
/bin/ln -f .gene_info.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.gene_info.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/pathhook.cpp -o pathhook.o 
cd util/compress/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=compress UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/compress.cpp -o compress.o 
/bin/rm -f libxser.so .libxser.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxser.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxser.so
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/stream.cpp -o stream.o 
/bin/ln -f .xser.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xser.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/tar.cpp -o tar.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive.cpp -o archive.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive_zip.cpp:45:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p)
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2226:19: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD'
   mz_uint16 c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]), s01 = TDEFL_READ_UNALIGNED_WORD(s);
                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p)
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD'
         if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break;
             ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2238:7: note: in expansion of macro 'TDEFL_PROBE'
       TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE;
       ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p)
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD'
         if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break;
             ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2238:20: note: in expansion of macro 'TDEFL_PROBE'
       TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE;
                    ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p)
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD'
         if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break;
             ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2238:33: note: in expansion of macro 'TDEFL_PROBE'
       TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE;
                                 ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p)
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2250:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD'
       c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]);
             ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c: In function 'ncbi::mz_bool ncbi::tdefl_compress_fast(ncbi::tdefl_compressor*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2323:160: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       if (((cur_match_dist = (mz_uint16)(lookahead_pos - probe_pos)) <= dict_size) && ((*(const mz_uint32 *)(d->m_dict + (probe_pos &= TDEFL_LZ_DICT_SIZE_MASK)) & 0xFFFFFF) == first_trigram))
                                                                                                                                                                ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive_zip.cpp:45:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c: At global scope:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:3325:27: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE int mz_zip_reader_filename_compare(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, const char *pR, mz_uint r_len)
                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:3314:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_reader_string_equal(const char *pA, const char *pB, mz_uint len, mz_uint flags)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:3225:39: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE const mz_uint8 *mz_zip_reader_get_cdh(mz_zip_archive *pZip, mz_uint file_index)
                                       ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2991:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_reader_filename_less(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, mz_uint r_index)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2918:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_array_push_back(mz_zip_archive *pZip, mz_zip_array *pArray, const void *pElements, size_t n)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2913:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_array_ensure_room(mz_zip_archive *pZip, mz_zip_array *pArray, size_t n)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2906:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_array_resize(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_size, mz_uint growing)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2900:31: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE mz_bool mz_zip_array_reserve(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_capacity, mz_uint growing)
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2885:28: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE void mz_zip_array_clear(mz_zip_archive *pZip, mz_zip_array *pArray)
                            ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/archive_zip.cpp:45:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2431:28: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE void tdefl_record_match(tdefl_compressor *d, mz_uint match_len, mz_uint match_dist)
                            ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2423:28: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE void tdefl_record_literal(tdefl_compressor *d, mz_uint8 lit)
                            ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/util/compress/api/miniz/miniz.c:2221:28: warning: always_inline function might not be inlinable [-Wattributes]
 static MZ_FORCEINLINE void tdefl_find_match(tdefl_compressor *d, mz_uint lookahead_pos, mz_uint max_dist, mz_uint max_match_len, mz_uint *pMatch_dist, mz_uint *pMatch_len)
                            ^
cd cgi/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/.#lock-map.
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o 
/bin/rm -f libxcompress.so .libxcompress.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -lbz2  -lz   -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxcompress.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxcompress.so
/bin/ln -f .xcompress.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xcompress.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/compress/api'
cd html/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=html UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/node.cpp -o node.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/html.cpp -o html.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/page.cpp -o page.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgictx.cpp -o cgictx.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/pager.cpp -o pager.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/selection.cpp -o selection.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/ncbires.cpp -o ncbires.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/components.cpp -o components.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/ref_args.cpp -o ref_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/commentdiag.cpp -o commentdiag.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/indentstream.cpp -o indentstream.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/html_exception.cpp -o html_exception.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o 
/bin/rm -f libxhtml.so .libxhtml.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxhtml.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxhtml.so
/bin/ln -f .xhtml.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xhtml.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/html'
cd util/xregexp/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/xregexp'
/usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `all'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/util/xregexp'
cd algo/blast/core/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blast UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_stat.c:5109:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
 static double s_CalculateNormalProbability(double x_, double eps_) 
               ^
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/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o 
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/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/split_query.c -o split_query.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC     -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o 
/bin/rm -f libxcgi.so .libxcgi.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/rm -f libblast.so .libblast.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  -fPIC  aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblast.so
/bin/ln -f .blast.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blast.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/core'
cd objtools/blast/gene_info_reader/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxcgi.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxcgi.so
/bin/ln -f .xcgi.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xcgi.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/cgi'
cd serial/datatool/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o 
/usr/bin/g++  -std=gnu++11  -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  gene_info_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm  -lpthread -o gene_info_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f gene_info_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/gene_info_unit_test
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/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f datatool /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/serial/datatool'
cd objects/general/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
cd objects/biblio/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh biblio all
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh general all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio'
/usr/bin/make[2] (Makefile.general.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
cd objects/medline/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh medline all
/usr/bin/make[2] (Makefile.biblio.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
cd objects/pub/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh pub all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump 
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub'
/usr/bin/make[2] (Makefile.medline.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
cd objects/seqcode/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh seqcode all
/usr/bin/make[2] (Makefile.pub.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
cd objects/seq/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/Makefile.sources builddir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -w -j --jobserver-fds=3,4 all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump 
make[4]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
status=0 ; \
for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \
    d=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../$x ; \
    (cd $d  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh) || status=9 ; \
    test -f ${x}__.cpp  ||  \
        echo "#include \"../$x/${x}__.cpp\""  > ${x}__.cpp ; \
    test -f ${x}___.cpp  ||  \
        echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode'
/usr/bin/make[2] (Makefile.seqcode.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
cd objects/blastdb/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh blastdb all
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump 
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb'
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqblock'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
/usr/bin/make[2] (Makefile.blastdb.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump 
cd objects/genomecoll/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh genome_collection all
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqblock'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump 
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh gencoll_client all
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll'
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump 
/usr/bin/make[2] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'.
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
cd objects/seqset/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh seqset all
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqres'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump 
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqres'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset'
make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset'
make[5]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqtable'
make[5]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump 
/usr/bin/make[2] (Makefile.seqset.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
cd objects/scoremat/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh scoremat all
datatool: 2.12.0
make[5]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqtable'
make[4]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh seq all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqblock/seqblock.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign/seqalign.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqres/seqres.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump 
/usr/bin/make[2] (Makefile.scoremat.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
cd objects/seqedit/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh seqedit all
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign/seqalign.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump 
/usr/bin/make[2] (Makefile.seq.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
cd objects/submit/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh submit all
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit'
/usr/bin/make[2] (Makefile.seqedit.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
cd objects/variation/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump 
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh variation all
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit'
/usr/bin/make[2] (Makefile.submit.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
cd objects/blast/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh blast all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat/scoremat.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump 
/usr/bin/make[2] (Makefile.variation.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
cd objects/id1/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh id1 all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1'
/usr/bin/make[2] (Makefile.blast.lib): Nothing to be done for `export-headers'.
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1'
/usr/bin/make[2] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.id1.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.id1cli.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
cd objects/seqsplit/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh seqsplit all
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
cd objects/id2/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh id2 all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqalign/seqalign.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump 
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit/seqsplit.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2'
/usr/bin/make[2] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
/usr/bin/make[2] (Makefile.id2.lib): Nothing to be done for `export-headers'.
cd objects/blastxml/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh blastxml all
/usr/bin/make[2] (Makefile.id2cli.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
cd objects/blastxml2/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
File blastxml.module not found. Using defaults...
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh blastxml2 all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml'
File blastxml2.module not found. Using defaults...
/usr/bin/make[2] (Makefile.blastxml.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
cd objects/entrez2/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh entrez2 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2'
/usr/bin/make[2] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
cd objects/gbseq/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh gbseq all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump 
/usr/bin/make[2] (Makefile.entrez2.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'.
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq'
/usr/bin/make[2] (Makefile.gbseq.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
cd objects/medlars/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
cd objects/pubmed/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh medlars all
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh pubmed all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed'
/usr/bin/make[2] (Makefile.medlars.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
cd objects/mla/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh mla all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed'
/usr/bin/make[2] (Makefile.pubmed.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
cd objects/taxon1/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh taxon1 all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars/medlars.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed/pubmed.asn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump 
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1'
/usr/bin/make[2] (Makefile.mla.lib): Nothing to be done for `export-headers'.
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1'
/usr/bin/make[2] (Makefile.mlacli.lib): Nothing to be done for `export-headers'.
/usr/bin/make[2] (Makefile.taxon1.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
cd objects/valid/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh valid all
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
cd objects/valerr/ && /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j sources
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
cd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr  &&  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/new_module.sh valerr all
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump 
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid'
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid'
/usr/bin/make -w -j --jobserver-fds=3,4 -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ DATATOOL=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool MODULE_SEARCH=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr'
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/datatool -oR /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++ -opm /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump 
/usr/bin/make[2] (Makefile.valid.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
cd objects/general/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=general UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
datatool: 2.12.0
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr'
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr'
/usr/bin/make[2] (Makefile.valerr.lib): Nothing to be done for `export-headers'.
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
cd objects/seqcode/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ=""  sources= configurables=configurables.null
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general__.cpp -o general__.o 
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o 
/bin/rm -f libseqcode.so .libseqcode.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seqcode__.o seqcode___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqcode.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqcode.so
/bin/ln -f .seqcode.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqcode.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqcode'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/general___.cpp -o general___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o 
cd objects/blastxml/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o 
/bin/rm -f libgeneral.so .libgeneral.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  general__.o general___.o uoconv.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libgeneral.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libgeneral.so
/bin/ln -f .general.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.general.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/general'
cd objects/blastxml2/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o 
/bin/rm -f libblastxml.so .libblastxml.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blastxml__.o blastxml___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblastxml.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblastxml.so
/bin/ln -f .blastxml.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blastxml.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml'
cd objects/entrez2/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o 
/bin/rm -f libblastxml2.so .libblastxml2.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blastxml2__.o blastxml2___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblastxml2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblastxml2.so
/bin/ln -f .blastxml2.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blastxml2.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastxml2'
cd objects/gbseq/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o 
/bin/rm -f libentrez2.so .libentrez2.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  entrez2__.o entrez2___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libentrez2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libentrez2.so
/bin/ln -f .entrez2.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.entrez2.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
cd objects/valid/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=valid UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid/valid__.cpp -o valid__.o 
/bin/rm -f libgbseq.so .libgbseq.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  gbseq__.o gbseq___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libgbseq.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libgbseq.so
/bin/ln -f .gbseq.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.gbseq.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/gbseq'
cd objects/biblio/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valid/valid___.cpp -o valid___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o 
/bin/rm -f libvalid.so .libvalid.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  valid__.o valid___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libvalid.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libvalid.so
/bin/ln -f .valid.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.valid.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valid'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o 
cd objects/entrez2/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o 
/bin/rm -f libbiblio.so .libbiblio.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  biblio__.o biblio___.o citation_base.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libbiblio.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libbiblio.so
/bin/ln -f .biblio.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.biblio.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/biblio'
cd objects/medline/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=medline UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline__.cpp -o medline__.o 
/bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  entrez2_client.o entrez2_client_.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libentrez2cli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libentrez2cli.so
/bin/ln -f .entrez2cli.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.entrez2cli.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/entrez2'
cd objects/medlars/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medline/medline___.cpp -o medline___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o 
/bin/rm -f libmedlars.so .libmedlars.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  medlars__.o medlars___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libmedlars.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libmedlars.so
/bin/ln -f .medlars.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.medlars.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medlars'
/bin/rm -f libmedline.so .libmedline.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  medline__.o medline___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libmedline.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libmedline.so
/bin/ln -f .medline.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.medline.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/medline'
cd objects/pub/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=pub UNIX_PROJ=""  sources= configurables=configurables.null
cd objects/pubmed/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub__.cpp -o pub__.o 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/pub/pub___.cpp -o pub___.o 
/bin/rm -f libpubmed.so .libpubmed.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  pubmed__.o pubmed___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libpubmed.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libpubmed.so
/bin/ln -f .pubmed.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.pubmed.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pubmed'
/bin/rm -f libpub.so .libpub.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  pub__.o pub___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libpub.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libpub.so
/bin/ln -f .pub.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.pub.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/pub'
cd objects/seq/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seq UNIX_PROJ=""  sources= configurables=configurables.null
cd objects/mla/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=mla UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla/mla__.cpp -o mla__.o 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq__.cpp -o seq__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla/mla___.cpp -o mla___.o 
/bin/rm -f libmla.so .libmla.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  mla__.o mla___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libmla.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libmla.so
/bin/ln -f .mla.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.mla.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqalign__.cpp -o seqalign__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqblock__.cpp -o seqblock__.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0,
                 from seqalign__.cpp:1:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1387:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909) [-Wdeprecated-declarations]
         SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand);
                                                                     ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqalign/Std_seg.hpp:79) [-Wdeprecated-declarations]
             (*std_it)->RemapToLoc(row, dst_loc, ignore_strand);
                                                              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1396:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1370) [-Wdeprecated-declarations]
             (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand);
                                                                    ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqfeat__.cpp -o seqfeat__.o 
cd objects/mla/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o 
/bin/rm -f libmlacli.so .libmlacli.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  mla_client.o mla_client_.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libmlacli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libmlacli.so
/bin/ln -f .mlacli.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.mlacli.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/mla'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqloc__.cpp -o seqloc__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqres__.cpp -o seqres__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqtable__.cpp -o seqtable__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq___.cpp -o seq___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqalign___.cpp -o seqalign___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqblock___.cpp -o seqblock___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqfeat___.cpp -o seqfeat___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqloc___.cpp -o seqloc___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqres___.cpp -o seqres___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  seqtable___.cpp -o seqtable___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o 
/bin/rm -f libseq.so .libseq.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseq.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseq.so
/bin/ln -f .seq.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seq.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seq'
cd objects/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ=""  sources= configurables=configurables.null
cd objects/genomecoll/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o 
/bin/rm -f libblastdb.so .libblastdb.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blastdb__.o blastdb___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblastdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblastdb.so
/bin/ln -f .blastdb.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blastdb.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blastdb'
cd objects/seqset/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o 
/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  genome_collection__.o genome_collection___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libgenome_collection.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libgenome_collection.so
/bin/ln -f .genome_collection.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.genome_collection.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/genomecoll'
cd objtools/blast/seqdb_reader/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o 
/bin/rm -f libseqset.so .libseqset.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seqset__.o seqset___.o gb_release_file.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqset.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqset.so
/bin/ln -f .seqset.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqset.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqset'
cd objects/variation/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=variation UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation/variation__.cpp -o variation__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/variation/variation___.cpp -o variation___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o 
/bin/rm -f libvariation.so .libvariation.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  variation__.o variation___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libvariation.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libvariation.so
/bin/ln -f .variation.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.variation.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/variation'
cd algo/blast/dbindex/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
/usr/bin/g++  -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o 
/usr/bin/g++  -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o 
/usr/bin/g++  -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
     unsigned long tmp;
                   ^
/usr/bin/g++  -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/util/sequence.hpp:274) [-Wdeprecated-declarations]
     string idstr = objects::sequence::GetTitle( bsh );
                                                     ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o 
/usr/bin/g++  -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o 
/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxalgoblastdbindex.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxalgoblastdbindex.so
/bin/ln -f .xalgoblastdbindex.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xalgoblastdbindex.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o 
cd algo/dustmask/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiexpt.hpp:42:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/tempstr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:45,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:35:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<SRequestCtxWrapper> m_DefaultRequestCtx; // Default request context
                                  ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_Username;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_AppName;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     mutable auto_ptr<CEncodedString>    m_DefaultSessionId;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_ErrLogRC;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_TraceLogRC;
                                         ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:45:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:35:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:3743:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<string> m_Encoded;
                      ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbi_param.hpp:41:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:50,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:35:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiapp.hpp:588:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CArgs>            m_Args;       ///< Parsed cmd.-line args
                                ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:50,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:35:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter<DstType, SrcType>::Convert(void*, const void*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::first_type*>(0),
              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::second_type*>(0),
              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr<std::vector<std::pair<unsigned int, unsigned int> > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:218:35: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     std::auto_ptr< TMaskList > res( new TMaskList );
                                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp: At global scope:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:289:55: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
 CSymDustMasker::operator()( const sequence_type & seq )
                                                       ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector<ncbi::CConstRef<ncbi::objects::CSeq_loc> >&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:299:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     std::auto_ptr< TMaskList > res = (*this)( seq );
                                ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:298:59: warning: typedef 'locs_type' locally defined but not used [-Wunused-local-typedefs]
     typedef std::vector< CConstRef< objects::CSeq_loc > > locs_type;
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef<ncbi::objects::CPacked_seqint> ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/dustmask/symdust.cpp:313:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     std::auto_ptr< TMaskList > res = (*this)( seq );
                                ^
/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  symdust.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxalgodustmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxalgodustmask.so
/bin/ln -f .xalgodustmask.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xalgodustmask.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/dustmask'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef<ncbi::objects::CBlast_def_line_set> ncbi::CSeqDBVol::x_GetTaxDefline(int, int, ncbi::CSeqDBLockHold&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1005:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs]
     typedef TBDLL::iterator               TBDLLIter;
                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1006:43: warning: typedef 'TBDLLConstIter' locally defined but not used [-Wunused-local-typedefs]
     typedef TBDLL::const_iterator         TBDLLConstIter;
                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::list<ncbi::CRef<ncbi::objects::CSeqdesc> > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef<ncbi::CSeqDBTaxInfo>, ncbi::CSeqDBLockHold&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs]
     typedef TBDLL::iterator               TBDLLIter;
                                           ^
cd algo/winmask/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiexpt.hpp:42:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/tempstr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbicntr.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiobj.hpp:39,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/winmask/seq_masker_window.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker.cpp:40:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<SRequestCtxWrapper> m_DefaultRequestCtx; // Default request context
                                  ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_Username;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_AppName;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     mutable auto_ptr<CEncodedString>    m_DefaultSessionId;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_ErrLogRC;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_TraceLogRC;
                                         ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistd.hpp:37:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbicntr.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiobj.hpp:39,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/winmask/seq_masker_window.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker.cpp:40:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:3743:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<string> m_Encoded;
                      ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbi_param.hpp:41:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/winmask/seq_masker_window.hpp:39,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker.cpp:40:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiapp.hpp:588:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CArgs>            m_Args;       ///< Parsed cmd.-line args
                                ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/winmask/seq_masker_window.hpp:39,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker.cpp:40:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter<DstType, SrcType>::Convert(void*, const void*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::first_type*>(0),
              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::second_type*>(0),
              ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable]
     int result(-1);
         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector<std::basic_string<char> >&, std::vector<std::basic_string<char> >&, std::vector<long int>&, ncbi::CSeqDBLockHold&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable]
     int found_short(-1);
         ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o 
/bin/rm -f libseqdb.so .libseqdb.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqdb.so
/bin/ln -f .seqdb.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqdb.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader'
cd objtools/readers/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef<ncbi::objects::CBioseq_set> ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CSeq_entry> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/readers/agp_read.hpp:61) [-Wdeprecated-declarations]
     AgpRead(is, entries, component_id_rule, set_gap_data, component_types);
                                                                          ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CSeq_entry> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector<ncbi::CRef<ncbi::objects::CBioseq> >&, ncbi::EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/readers/agp_read.hpp:52) [-Wdeprecated-declarations]
     AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types);
                                                                          ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     if( k == 0U || k > (Uint4)(2*unit_size - 1) )
                                                 ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/fasta.cpp -o fasta.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/util/sequence.hpp:274) [-Wdeprecated-declarations]
     string id_str = sequence::GetTitle( bsh );
                                             ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o 
/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxalgowinmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxalgowinmask.so
/bin/ln -f .xalgowinmask.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xalgowinmask.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/winmask'
cd objects/id1/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1/id1__.cpp -o id1__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id1/id1___.cpp -o id1___.o 
/bin/rm -f libid1.so .libid1.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  id1__.o id1___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libid1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libid1.so
/bin/ln -f .id1.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.id1.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id1'
cd objects/seqsplit/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/microarray_reader.cpp:86:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/readers/microarray_reader.hpp: In constructor 'ncbi::objects::CMicroArrayReader::CMicroArrayReader(int)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/readers/microarray_reader.hpp:114:10: warning: 'ncbi::objects::CMicroArrayReader::m_usescore' will be initialized after [-Wreorder]
     bool m_usescore;
          ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/readers/microarray_reader.hpp:113:31: warning:   'std::vector<std::basic_string<char> >::size_type ncbi::objects::CMicroArrayReader::m_columncount' [-Wreorder]
     vector<string>::size_type m_columncount;
                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/microarray_reader.cpp:99:1: warning:   when initialized here [-Wreorder]
 CMicroArrayReader::CMicroArrayReader(
 ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o 
/bin/rm -f libseqsplit.so .libseqsplit.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seqsplit__.o seqsplit___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqsplit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqsplit.so
/bin/ln -f .seqsplit.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqsplit.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqsplit'
cd objtools/alnmgr/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_builders.cpp: In function 'void ncbi::BuildAln(ncbi::TAnchoredAlnVec&, ncbi::CAnchoredAln&, const ncbi::CAlnUserOptions&, ncbi::TAlnSeqIdIRef)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_builders.cpp:551:46: warning: typedef 'TPairwiseAlnVector' locally defined but not used [-Wunused-local-typedefs]
     typedef CAnchoredAln::TPairwiseAlnVector TPairwiseAlnVector;
                                              ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs]
     typedef CAlignRangeCollection<TAlnRng> TAlnRngColl;
                                            ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef<ncbi::objects::CSeq_align> ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector<int>&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmap.cpp:1469:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (TNumrow row = 0; row < selected_rows.size(); row++) {
                                                        ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixMatch>&, const ncbi::CRef<ncbi::objects::CAlnMixMatch>&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
         match1->m_ChainScore == match2->m_ChainScore  &&
                                                       ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                             (aln_seq1->m_StrandScore > 0  && 
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                              aln_seq2->m_StrandScore > 0  && 
                                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                              aln_seq2->m_StrandScore < 0  && 
                                                           ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                 seq1->m_SeqIdx == seq2->m_SeqIdx  &&  
                                                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
     if (m_AlnMixMatches->m_ContainsNA  &&  m_AlnMixMatches->m_ContainsAA  ||
                                        ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (start_its_i->second->first != -1) {
                                                ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
     if (m_AlnMixMatches->m_ContainsNA  &&  m_AlnMixMatches->m_ContainsAA  || 
                                        ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized]
     int width1, width2;
                 ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnmix.cpp:38:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                 seq1->m_SeqIdx == seq2->m_SeqIdx  &&  
                                                   ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                 seq1->m_SeqIdx == seq2->m_SeqIdx  &&  
                                                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                 if (plus  &&  prev_start_plus_len < start  ||
                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::x_ConsolidateGaps(ncbi::objects::CAlnMixSegments::TSegmentsContainer&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnsegments.cpp:406:33: warning: 'score1' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 if (score2 < 75 * score1 / 100) {
                                 ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                 seq1->m_SeqIdx == seq2->m_SeqIdx  &&  
                                                   ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixSeq>&, const ncbi::CRef<ncbi::objects::CAlnMixSeq>&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
         seq1->m_ChainScore == seq2->m_ChainScore  &&
                                                   ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::objects::CAutoInitDesc<ncbi::objects::CBioSource>&, ncbi::CTempString)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/source_mod_parser.cpp:663:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if( colon_location == string::npos ) {
                                       ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                         if (left_seg < 0  ||  seg > right_seg  &&  right_seg > 0) {
                                                                ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                         if (left_seg < 0  ||  seg > right_seg  &&  right_seg > 0) {
                                                                ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o 
/bin/rm -f libxobjread.so .libxobjread.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lcreaders -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxobjread.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxobjread.so
/bin/ln -f .xobjread.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xobjread.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/readers'
cd objtools/blast/blastdb_format/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'bool ncbi::s_IsProteinToGenomic(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:519:20: warning: unused variable 'id1' [-Wunused-variable]
     const CSeq_id& id1 = align.GetSeq_id(1);
                    ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o 
/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxalnmgr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxalnmgr.so
/bin/ln -f .xalnmgr.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xalnmgr.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/alnmgr'
cd objtools/data_loaders/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o 
/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seq_writer.o blastdb_dataextract.o blastdb_formatter.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblastdb_format.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblastdb_format.so
/bin/ln -f .blastdb_format.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blastdb_format.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format'
cd objects/taxon1/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o 
/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  bdbloader.o cached_sequence.o local_blastdb_adapter.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xloader_blastdb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xloader_blastdb.so
/bin/ln -f .ncbi_xloader_blastdb.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xloader_blastdb.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
cd objects/valerr/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/cache.cpp -o cache.o 
/bin/rm -f libvalerr.so .libvalerr.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  valerr__.o valerr___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libvalerr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libvalerr.so
/bin/ln -f .valerr.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.valerr.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/valerr'
cd objtools/simple/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o 
/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  simple_om.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxobjsimple.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxobjsimple.so
/bin/ln -f .xobjsimple.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xobjsimple.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/simple'
cd objtools/blast/seqdb_writer/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/utils.cpp -o utils.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o 
/bin/rm -f libtaxon1.so .libtaxon1.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libtaxon1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libtaxon1.so
/bin/ln -f .taxon1.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.taxon1.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/taxon1'
cd algo/segmask/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o 
/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  segmask.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxalgosegmask.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxalgosegmask.so
/bin/ln -f .xalgosegmask.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xalgosegmask.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/segmask'
cd objects/scoremat/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o 
/bin/rm -f libscoremat.so .libscoremat.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  scoremat__.o scoremat___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libscoremat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libscoremat.so
/bin/ln -f .scoremat.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.scoremat.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/scoremat'
cd objects/seqedit/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o 
/bin/rm -f libseqedit.so .libseqedit.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seqedit__.o seqedit___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqedit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqedit.so
/bin/ln -f .seqedit.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqedit.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/seqedit'
cd objtools/seqmasks_io/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o 
/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lseqdb -lblastdb -ldl -lm  -lpthread 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqmasks_io.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqmasks_io.so
/bin/ln -f .seqmasks_io.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqmasks_io.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/seqmasks_io'
cd objects/submit/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=submit UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit/submit__.cpp -o submit__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/submit/submit___.cpp -o submit___.o 
/bin/rm -f libsubmit.so .libsubmit.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  submit__.o submit___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libsubmit.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libsubmit.so
/bin/ln -f .submit.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.submit.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/submit'
cd objects/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blast UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast/blast__.cpp -o blast__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast/blast___.cpp -o blast___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o 
/bin/rm -f libwritedb.so .libwritedb.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libwritedb.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libwritedb.so
/bin/ln -f .writedb.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.writedb.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast/names.cpp -o names.o 
cd objmgr/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o 
/bin/rm -f libxnetblast.so .libxnetblast.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blast__.o blast___.o names.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxnetblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxnetblast.so
/bin/ln -f .xnetblast.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xnetblast.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
cd objmgr/util/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=util UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/weight.cpp -o weight.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/table_field.cpp -o table_field.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/feature.cpp -o feature.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/feature.cpp: In function 'bool ncbi::objects::feature::sFeatureGetChildrenOfSubtype(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector<ncbi::objects::CMappedFeat>&, ncbi::objects::feature::CFeatTree*)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/feature.cpp:3164:22: warning: unused variable 'ff' [-Wunused-variable]
     const CSeq_feat& ff = mf.GetOriginalFeature();
                      ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/create_defline.cpp:2275:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) {
                                                                       ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o 
/bin/rm -f libxobjutil.so .libxobjutil.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxobjutil.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxobjutil.so
/bin/ln -f .xobjutil.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xobjutil.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/util'
cd objtools/blast/services/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o 
/bin/rm -f libblast_services.so .libblast_services.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blast_services.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblast_services.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblast_services.so
/bin/ln -f .blast_services.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blast_services.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services'
cd objects/id2/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2/id2__.cpp -o id2__.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/id2/id2___.cpp -o id2___.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o 
/bin/rm -f libid2.so .libid2.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  id2__.o id2___.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libid2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libid2.so
/bin/ln -f .id2.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.id2.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/id2'
cd objtools/data_loaders/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o 
/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  bdbloader_rmt.o remote_blastdb_adapter.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xloader_blastdb_rmt.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so
/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/blastdb'
cd objtools/cleanup/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/data_source.cpp -o data_source.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/priority.cpp -o priority.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/scope.cpp -o scope.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o 
/bin/rm -f libxcleanup.so .libxcleanup.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxregexp -lpcre  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxcleanup.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxcleanup.so
/bin/ln -f .xcleanup.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xcleanup.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/cleanup'
cd objtools/format/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o 
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/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/date_item.cpp -o date_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/feature_item.cpp:1795:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if ( idx > 0 && idx < ArraySize(s_TrnaList) ) {
                                               ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/primary_item.cpp:213:79: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if ( ctx.IsRefSeq() && last_stop > -1 &&  (this_start > (last_stop + 1)) ) {
                                                                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/primary_item.cpp:214:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (this_start < (15 + last_stop) ) {
                                             ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/source_item.cpp -o source_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/source_item.cpp:257:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if ( genome >= s_organelle_prefix_size ) {
                        ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/version_item.cpp -o version_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/context.cpp -o context.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/utils.cpp -o utils.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::s_IsTagStart(const const_iterator&, const const_iterator&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/utils.cpp:1346:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for( int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx ) {
                                                       ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::CommentHasSuspiciousHtml(const string&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/utils.cpp:1449:72: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for( ; ii < sizeof(bad_html_strings)/sizeof(bad_html_strings[0]) ; ++ii ) {
                                                                        ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gather_items.cpp:748:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function]
 static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx)
             ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/tempstr.hpp:39:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp:34:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff_formatter.hpp:89) [-Wdeprecated-declarations]
     {
     ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR'
 #  define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp: In static member function 'static ncbi::objects::CFlatItemFormatter* ncbi::objects::CFlatItemFormatter::New(ncbi::objects::CFlatFileConfig::TFormat)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'CGFFFormatter' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff_formatter.hpp:71) [-Wdeprecated-declarations]
         return new CGFFFormatter;
                    ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff_formatter.hpp:89) [-Wdeprecated-declarations]
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp:96:20: warning: 'CGFF3_Formatter' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:62) [-Wdeprecated-declarations]
         return new CGFF3_Formatter;
                    ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp: In function 'void ncbi::objects::s_FormatCitGen(const ncbi::objects::CReferenceItem&, std::string&, const ncbi::objects::CFlatFileConfig&, ncbi::objects::CBioseqContext&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_formatter.cpp:875:70: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
                         date.IsStd()  &&  date.GetStd().IsSetYear()  &&  date.GetStd().GetYear() != 0) {
                                                                      ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_gather.cpp -o gff_gather.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_formatter.cpp -o gff_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_formatter.cpp: In member function 'virtual void ncbi::objects::CGFFFormatter::FormatFeature(const ncbi::objects::CFeatureItemBase&, ncbi::objects::IFlatTextOStream&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_formatter.cpp:217:62: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&, const ncbi::objects::CCdregion&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/util/sequence.hpp:874) [-Wdeprecated-declarations]
                     (s, ctx.GetHandle(), *tentative_stop, cds);
                                                              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_formatter.cpp: In member function 'void ncbi::objects::CGFFFormatter::x_AddFeature(std::list<std::basic_string<char> >&, const ncbi::objects::CSeq_loc&, const string&, const string&, const string&, int, const string&, bool, ncbi::objects::CBioseqContext&, bool) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff_formatter.cpp:557:69: warning: 'static int ncbi::NStr::StringToNumeric(const string&)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:248) [-Wdeprecated-declarations]
                         int n = NStr::StringToNumeric((*q)->GetVal());
                                                                     ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o 
/bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxobjmgr.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxobjmgr.so
/bin/ln -f .xobjmgr.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xobjmgr.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp -o gff3_formatter.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     Uint4 end_value = *((int *) & end_bytes);
                                            ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/tempstr.hpp:39:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistd.hpp:37,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbitime.hpp:62,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp:36:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff_formatter.hpp:89) [-Wdeprecated-declarations]
     {
     ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR'
 #  define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp: At global scope:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp:116:56: warning: 'CGFF3_Formatter' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:62) [-Wdeprecated-declarations]
                           IFlatTextOStream&     text_os);
                                                        ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp:131:33: warning: 'CGFF3_Formatter' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:62) [-Wdeprecated-declarations]
     CGFF3_Formatter&            m_GFF3_Fmt;
                                 ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gff3_formatter.cpp:139:76: warning: 'CGFF3_Formatter' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objtools/format/gff3_formatter.hpp:62) [-Wdeprecated-declarations]
                                              IFlatTextOStream&      text_os)
                                                                            ^
/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp
ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblast_unit_test_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblast_unit_test_util.a
/bin/ln -f .blast_unit_test_util.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blast_unit_test_util.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o 
/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp
ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libseqalign_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libseqalign_util.a
/bin/ln -f .seqalign_util.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.seqalign_util.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o 
cd algo/blast/unit_tests/seqdb_reader/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable]
     int          wholeL(0);
                  ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o 
/bin/rm -f libxformat.so .libxformat.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o utils.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o gff_gather.o gff_formatter.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gff3_formatter.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxformat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxformat.so
/bin/ln -f .xformat.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xformat.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/format'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  seqdb_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o seqdb_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seqdb_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seqdb_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
cd objmgr/split/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o 
/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp
ar cr libblast_app_util.a blast_app_util.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblast_app_util.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblast_app_util.a
/bin/ln -f .blast_app_util.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blast_app_util.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o 
cd objtools/blast/blastdb_format/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  seq_writer_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o blastdb_format_unit_test 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdb_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdb_format_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
cd objtools/blast/gene_info_reader/demo/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  gene_info_reader_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o gene_info_reader 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f gene_info_reader /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/gene_info_reader
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
cd objtools/blast/seqdb_reader/demo/ &&  NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  seqdb_demo.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqdb_demo 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seqdb_demo /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seqdb_demo
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
cd objtools/blast/seqdb_reader/test/ &&  NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   seqdb_perf.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqdb_perf 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seqdb_perf /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seqdb_perf
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_reader/test'
cd objtools/blast/seqdb_writer/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  writedb_unit_test.o criteria_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o writedb_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f writedb_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/writedb_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/size.cpp -o size.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o 
cd objects/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o 
/bin/rm -f libid2_split.so .libid2_split.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libid2_split.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libid2_split.so
/bin/ln -f .id2_split.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.id2_split.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objmgr/split'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o 
cd objtools/data_loaders/genbank/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o 
/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blastclient.o blastclient_.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxnetblastcli.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxnetblastcli.so
/bin/ln -f .xnetblastcli.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xnetblastcli.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objects/blast'
cd objtools/data_loaders/genbank/id2/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include   /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o 
/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp
ar cr libncbi_xreader_id2.a reader_id2.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id2.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_id2.a
/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  reader_id2.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib  -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id2.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_id2.so
/bin/ln -f .ncbi_xreader_id2-static.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_id2-static.dep
/bin/ln -f .ncbi_xreader_id2.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_id2.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id2'
cd algo/blast/dbindex/makeindex/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  main.o mkindex_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o makembindex 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f makembindex /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/makembindex
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/dbindex/makeindex'
cd objtools/blast/services/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blast_services_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blast_services_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blast_services_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blast_services_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o 
cd algo/blast/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c
echo '#include "/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o 
/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp
ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader.a
/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader.so
/bin/ln -f .ncbi_xreader-static.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader-static.dep
/bin/ln -f .ncbi_xreader.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o 
cd objtools/data_loaders/genbank/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
     return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */
                                    ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
     m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */
                                     ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o 
/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp
ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xloader_genbank.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xloader_genbank.a
/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  gbloader.o gbload_util.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xloader_genbank.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xloader_genbank.so
/bin/ln -f .ncbi_xloader_genbank-static.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xloader_genbank-static.dep
/bin/ln -f .ncbi_xloader_genbank.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xloader_genbank.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o 
cd objtools/data_loaders/genbank/cache/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o 
/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp
ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_cache.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_cache.a
/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  reader_cache.o writer_cache.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_cache.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_cache.so
/bin/ln -f .ncbi_xreader_cache-static.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_cache-static.dep
/bin/ln -f .ncbi_xreader_cache.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_cache.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o 
cd objtools/data_loaders/genbank/id1/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include     /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o 
/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp
ar cr libncbi_xreader_id1.a reader_id1.o  
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id1.a /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_id1.a
/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  reader_id1.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id1.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libncbi_xreader_id1.so
/bin/ln -f .ncbi_xreader_id1-static.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_id1-static.dep
/bin/ln -f .ncbi_xreader_id1.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.ncbi_xreader_id1.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o 
cd objtools/align_format/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/showalign.cpp:4409:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){
                                                                          ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/showalign.cpp:4409:100: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){
                                                                                                    ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */
                       ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef<ncbi::objects::CPssmWithParameters>, const ncbi::blast::CBlastOptions&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     CRef<IQueryFactory> seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */
                                         ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o 
/bin/rm -f libalign_format.so .libalign_format.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_services -lgene_info -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxalnmgr -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxhtml -lxcgi -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libalign_format.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libalign_format.so
/bin/ln -f .align_format.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.align_format.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format'
cd app/dustmasker/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/dustmasker/main.cpp -o main.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/version.cpp -o version.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  main.o dust_mask_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lncbi_xloader_genbank -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcreaders -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o dustmasker 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f dustmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/dustmasker
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/dustmasker'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o 
cd app/winmasker/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/main.cpp -o main.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiexpt.hpp:42:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/tempstr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:38,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:45,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<SRequestCtxWrapper> m_DefaultRequestCtx; // Default request context
                                  ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_Username;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CEncodedString>            m_AppName;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     mutable auto_ptr<CEncodedString>    m_DefaultSessionId;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_ErrLogRC;
                                         ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CRequestRateControl>       m_TraceLogRC;
                                         ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:45:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbistr.hpp:3743:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<string> m_Encoded;
                      ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbi_param.hpp:41:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:50,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/ncbiapp.hpp:588:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
     auto_ptr<CArgs>            m_Args;       ///< Parsed cmd.-line args
                                ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_map.hpp:40:0,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:97,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/tse_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/bioseq_handle.hpp:42,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/objmgr/seq_vector.hpp:36,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/dustmask/symdust.hpp:50,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter<DstType, SrcType>::Convert(void*, const void*) const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::first_type*>(0),
              ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8.2/backward/auto_ptr.h:87) [-Wdeprecated-declarations]
             (MakeConverter(static_cast<typename DstType::second_type*>(0),
              ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  main.o win_mask_app.o win_mask_sdust_masker.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lncbi_xloader_genbank -lxalgowinmask -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o windowmasker 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f windowmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/windowmasker
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/winmasker'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o 
cd objtools/align_format/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef<ncbi::blast::CSearchResultSet> ncbi::blast::CLocalPssmSearch::Run()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */
                                           ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalnmgr -lncbi_xreader -lseqdb -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o align_format_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f align_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/align_format_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/objtools/align_format/unit_test'
cd algo/blast/format/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blast_format.cpp:52:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
             m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
                                       ^
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blast_format.cpp:54:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
             m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
                                        ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef<ncbi::objects::CSeq_align_set>, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/blast_format.cpp:476:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(count >= m_NumSummary)
                     ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/data4xmlformat.cpp:41:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
             m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
                                       ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
             m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
                                        ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/seedtop.cpp:73:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for (int i=0; i<(*unit).length(); ++i) {
                                                ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o 
/bin/rm -f libxblastformat.so .libxblastformat.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxblastformat.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxblastformat.so
/bin/ln -f .xblastformat.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xblastformat.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/format'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_aa_ungapped.c -o .core_aa_ungapped.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_diagnostics.c -o .core_blast_diagnostics.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_engine.c -o .core_blast_engine.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_extend.c -o .core_blast_extend.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_filter.c -o .core_blast_filter.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_gapalign.c -o .core_blast_gapalign.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_hits.c -o .core_blast_hits.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_hspstream.c -o .core_blast_hspstream.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_itree.c -o .core_blast_itree.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_kappa.c -o .core_blast_kappa.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_lookup.c -o .core_blast_lookup.o 
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/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_setup.c -o .core_blast_setup.o 
/usr/bin/gcc  -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -fPIC    -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  .core_blast_stat.c -o .core_blast_stat.o 
In file included from .core_blast_stat.c:1:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/api/../core/blast_stat.c:5109:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
 static double s_CalculateNormalProbability(double x_, double eps_) 
               ^
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/usr/bin/g++  -std=gnu++11  -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  -fPIC  .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libxblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libxblast.so
/bin/ln -f .xblast.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.xblast.dep
rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_posit.c .core_blast_sw.c .core_lookup_util.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_blast_util.c .core_blast_aascan.c .core_blast_dynarray.c .core_na_ungapped.c .core_blast_setup.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_extend.c .core_aa_ungapped.c .core_blast_lookup.c .core_ncbi_std.c .core_blast_psi.c .core_phi_gapalign.c .core_blast_encoding.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_gencode_singleton.c .core_blast_kappa.c .core_blast_filter.c .core_blast_engine.c .core_index_ungapped.c .core_blast_message.c .core_blast_nalookup.c .core_blast_options.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_parameters.c .core_hspfilter_culling.c .core_blast_aalookup.c .core_ncbi_math.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_blast_seg.c .core_lookup_wrap.c .core_blast_program.c
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/api'
cd algo/blast/blastinput/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ=""  sources= configurables=configurables.null
cd algo/blast/igblast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.lib.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o 
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o 
/bin/rm -f libigblast.so .libigblast.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  igblast.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libigblast.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libigblast.so
/bin/ln -f .igblast.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.igblast.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/igblast'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  aalookup_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o aalookup_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f aalookup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/aalookup_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  aascan_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o aascan_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f aascan_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/aascan_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastdiag_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastdiag_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdiag_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdiag_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
     options->SetFilterString("L");  /* NCBI_FAKE_WARNING */
                                 ^
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastengine_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastengine_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastengine_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastengine_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastextend_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastextend_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastextend_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastextend_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastfilter_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastfilter_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastfilter_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastfilter_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../core  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blasthits_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blasthits_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blasthits_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blasthits_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o 
/usr/bin/g++  -std=gnu++11 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o 
/bin/rm -f libblastinput.so .libblastinput.so.stamp
/usr/bin/g++  -std=gnu++11  -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O -fPIC  blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o  -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxutil -ldl -lm  -lpthread 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib
/bin/ln -f libblastinput.so /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib/libblastinput.so
/bin/ln -f .blastinput.dep /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/status/.blastinput.dep
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o 
In file included from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
      BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */
                                                            ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/test_boost.hpp:109:5: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL'
     S;                                                                       \
     ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1259:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1263:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1268:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1270:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1274:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1276:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1280:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1282:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1286:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
                                      ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1288:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations]
        opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
                                      ^
In file included from /usr/include/boost/test/unit_test.hpp:19:0,
                 from /usr/include/boost/test/auto_unit_test.hpp:18,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/corelib/test_boost.hpp:66,
                 from /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1327:57: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations]
     BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */
                                                         ^
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastoptions_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastoptions_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastoptions_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastoptions_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blastsetup_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastsetup_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastsetup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastsetup_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  gapinfo_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxalgowinmask -lblast_services -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lxnetblast -lxobjmgr -lxobjread -lscoremat -lseqedit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lnsl -ldl -lm -lpthread -o gapinfo_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f gapinfo_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/gapinfo_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  delta_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o delta_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f delta_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/delta_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  hspfilter_besthit_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_besthit_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f hspfilter_besthit_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/hspfilter_besthit_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
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cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  gencode_singleton_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o gencode_singleton_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f gencode_singleton_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/gencode_singleton_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  hspfilter_culling_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_culling_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f hspfilter_culling_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/hspfilter_culling_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  hspstream_unit_test.o hspstream_test_util.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspstream_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f hspstream_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/hspstream_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  msa2pssm_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o msa2pssm_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f msa2pssm_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/msa2pssm_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  linkhsp_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o linkhsp_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f linkhsp_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/linkhsp_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  ntlookup_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntlookup_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f ntlookup_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/ntlookup_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  ntscan_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntscan_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f ntscan_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/ntscan_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  phiblast_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o phiblast_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f phiblast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/phiblast_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  optionshandle_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o optionshandle_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f optionshandle_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/optionshandle_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  prelimsearch_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o prelimsearch_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f prelimsearch_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/prelimsearch_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  psibl2seq_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o psibl2seq_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f psibl2seq_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/psibl2seq_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  psiblast_iteration_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o psiblast_iteration_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f psiblast_iteration_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/psiblast_iteration_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../core /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  psiblast_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast_unit_test 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../core /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f psiblast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/psiblast_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../core /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  pssmenginefreqratios_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmenginefreqratios_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f pssmenginefreqratios_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/pssmenginefreqratios_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
         CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */
                                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector<int>&)':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
         CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */
                                               ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */
                                           ^
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmcreate_unit_test 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  querydata_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o querydata_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f pssmcreate_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/pssmcreate_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f querydata_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/querydata_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../core /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  queryinfo_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o queryinfo_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f queryinfo_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/queryinfo_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  redoalignment_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o redoalignment_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f redoalignment_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/redoalignment_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  rps_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o rps_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f rps_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/rps_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  remote_blast_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o remote_blast_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f remote_blast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/remote_blast_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  scoreblk_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o scoreblk_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f scoreblk_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/scoreblk_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  seqinfosrc_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqinfosrc_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seqinfosrc_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seqinfosrc_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  search_strategy_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o search_strategy_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f search_strategy_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/search_strategy_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o 
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  setupfactory_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o setupfactory_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f setupfactory_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/setupfactory_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqsrc_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seqsrc_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seqsrc_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  subj_ranges_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o subj_ranges_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f subj_ranges_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/subj_ranges_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  split_query_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o split_query_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f split_query_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/split_query_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  traceback_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o traceback_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f traceback_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/traceback_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/../../api  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  tracebacksearch_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o tracebacksearch_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f tracebacksearch_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/tracebacksearch_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  version_reference_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o version_reference_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f version_reference_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/version_reference_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/blast_format/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  uniform_search_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o uniform_search_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f uniform_search_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/uniform_search_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs -I../ /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  bdbloader_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o bdbloader_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f bdbloader_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/bdbloader_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blastdb'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(bss_ref));
                                           ^
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations]
     CRef<IQueryFactory> query_factory(new CObjMgrFree_QueryFactory(bss_ref));
                                           ^
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   blast_formatter.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_formatter 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blast_formatter /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blast_formatter
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_format_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blast_format_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blast_format_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/blast_format'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   blastn_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastn 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastn
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   blastp_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastp 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastp /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastp
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   blastx_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastx 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastx /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastx
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   deltablast_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o deltablast 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f deltablast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/deltablast
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   psiblast_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f psiblast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/psiblast
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   rpsblast_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpsblast 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f rpsblast /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/rpsblast
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   rpstblastn_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpstblastn 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f rpstblastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/rpstblastn
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   seedtop_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o seedtop 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f seedtop /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/seedtop
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blast/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   tblastn_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastn 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f tblastn /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/tblastn
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O   tblastx_app.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastx 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f tblastx /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/tblastx
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blast'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   blastdb_aliastool.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdb_aliastool 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdb_aliastool /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdb_aliastool
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   blastdbcheck.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcheck 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdbcheck /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdbcheck
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   blastdbcmd.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcmd 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdbcmd /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdbcmd
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   blastdbcp.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcp 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastdbcp /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastdbcp
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   convert2blastmask.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o convert2blastmask 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f convert2blastmask /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/convert2blastmask
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/blastdb/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   makeprofiledb.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeprofiledb 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f makeprofiledb /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/makeprofiledb
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd app/segmasker/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   makeblastdb.o masked_range_set.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeblastdb 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f makeblastdb /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/makeblastdb
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/blastdb'
cd algo/blast/blastinput/unit_test/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  segmasker.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxalgosegmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lz -ldl -lm -lpthread -o segmasker 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f segmasker /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/segmasker
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/app/segmasker'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o 
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::FullyMaskedSequence::test_method()':
/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:875:10: warning: unused variable 'caught_exception' [-Wunused-variable]
     bool caught_exception = false;
          ^
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  bl2seq_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o bl2seq_unit_test 
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f bl2seq_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/bl2seq_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ &&  /usr/bin/make -w --jobserver-fds=3,4 - --jobserver-fds=3,4 -j APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ=""  sources= configurables=configurables.null
make[2]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/Makefile.app.tmpl srcdir=/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all
make[3]: Entering directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -c  -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -fPIC  -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wno-narrowing -D_MT -D_REENTRANT -D_THREAD_SAFE -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/inc -I/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/include  -Wno-unused-local-typedefs /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o 
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O  blast_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blast_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blast_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++  -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic  -pthread -fopenmp -Wl,-z,relro   -gdwarf-3 -O   blastinput_unit_test.o blast_scope_src_unit_test.o   -Wl,-rpath,/usr/lib64/ncbi-blast+ -Wl,-rpath-link,/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -L/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lentrez2cli -lvalid -lblastxml -lblastxml2 -lentrez2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi  -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastinput_unit_test 
/bin/sh /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin
/bin/ln -f blastinput_unit_test /builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin/blastinput_unit_test
make[3]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[2]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[1]: Leaving directory `/builddir/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/build'
+ popd
+ exit 0
~/build/BUILD/ncbi-blast-2.2.31+-src
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iusDXD
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64
+ cd ncbi-blast-2.2.31+-src
+ mkdir -p /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64//usr/bin
+ mkdir -p /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64//usr/lib64/ncbi-blast+
+ install -p -m755 c++/BUILD/lib/libalign_format.so c++/BUILD/lib/libbiblio.so c++/BUILD/lib/libblast.so c++/BUILD/lib/libblast_services.so c++/BUILD/lib/libblastdb.so c++/BUILD/lib/libblastdb_format.so c++/BUILD/lib/libblastinput.so c++/BUILD/lib/libblastxml.so c++/BUILD/lib/libblastxml2.so c++/BUILD/lib/libcomposition_adjustment.so c++/BUILD/lib/libconnect.so c++/BUILD/lib/libcreaders.so c++/BUILD/lib/libentrez2.so c++/BUILD/lib/libentrez2cli.so c++/BUILD/lib/libgbseq.so c++/BUILD/lib/libgene_info.so c++/BUILD/lib/libgeneral.so c++/BUILD/lib/libgenome_collection.so c++/BUILD/lib/libid1.so c++/BUILD/lib/libid2.so c++/BUILD/lib/libid2_split.so c++/BUILD/lib/libigblast.so c++/BUILD/lib/libmedlars.so c++/BUILD/lib/libmedline.so c++/BUILD/lib/libmla.so c++/BUILD/lib/libmlacli.so c++/BUILD/lib/libncbi_xloader_blastdb.so c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so c++/BUILD/lib/libncbi_xloader_genbank.so c++/BUILD/lib/libncbi_xreader.so c++/BUILD/lib/libncbi_xreader_cache.so c++/BUILD/lib/libncbi_xreader_id1.so c++/BUILD/lib/libncbi_xreader_id2.so c++/BUILD/lib/libpub.so c++/BUILD/lib/libpubmed.so c++/BUILD/lib/libscoremat.so c++/BUILD/lib/libseq.so c++/BUILD/lib/libseqcode.so c++/BUILD/lib/libseqdb.so c++/BUILD/lib/libseqedit.so c++/BUILD/lib/libseqmasks_io.so c++/BUILD/lib/libseqset.so c++/BUILD/lib/libseqsplit.so c++/BUILD/lib/libsequtil.so c++/BUILD/lib/libsubmit.so c++/BUILD/lib/libtables.so c++/BUILD/lib/libtaxon1.so c++/BUILD/lib/libtest_boost.so c++/BUILD/lib/libtest_mt.so c++/BUILD/lib/libvalerr.so c++/BUILD/lib/libvalid.so c++/BUILD/lib/libvariation.so c++/BUILD/lib/libwritedb.so c++/BUILD/lib/libxalgoblastdbindex.so c++/BUILD/lib/libxalgodustmask.so c++/BUILD/lib/libxalgosegmask.so c++/BUILD/lib/libxalgowinmask.so c++/BUILD/lib/libxalnmgr.so c++/BUILD/lib/libxblast.so c++/BUILD/lib/libxblastformat.so c++/BUILD/lib/libxcgi.so c++/BUILD/lib/libxcleanup.so c++/BUILD/lib/libxcompress.so c++/BUILD/lib/libxconnect.so c++/BUILD/lib/libxformat.so c++/BUILD/lib/libxhtml.so c++/BUILD/lib/libxncbi.so c++/BUILD/lib/libxnetblast.so c++/BUILD/lib/libxnetblastcli.so c++/BUILD/lib/libxobjmgr.so c++/BUILD/lib/libxobjread.so c++/BUILD/lib/libxobjsimple.so c++/BUILD/lib/libxobjutil.so c++/BUILD/lib/libxregexp.so c++/BUILD/lib/libxser.so c++/BUILD/lib/libxutil.so /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64//usr/lib64/ncbi-blast+
+ pushd c++/BUILD/bin
~/build/BUILD/ncbi-blast-2.2.31+-src/c++/BUILD/bin ~/build/BUILD/ncbi-blast-2.2.31+-src
+ install -p -m755 blastp blastn blastx tblastn tblastx psiblast rpsblast rpstblastn blast_formatter deltablast makembindex segmasker dustmasker windowmasker makeblastdb makeprofiledb blastdbcmd blastdb_aliastool convert2blastmask blastdbcheck legacy_blast.pl update_blastdb.pl /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64//usr/bin
+ popd
~/build/BUILD/ncbi-blast-2.2.31+-src
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/ncbi-blast-2.2.31+-src
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxutil.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxser.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxregexp.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxobjutil.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxobjsimple.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxobjread.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxobjmgr.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxnetblastcli.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxnetblast.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxncbi.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxhtml.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxformat.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxconnect.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxcompress.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxcleanup.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxcgi.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxblastformat.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxblast.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxalnmgr.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxalgowinmask.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxalgosegmask.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxalgodustmask.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libxalgoblastdbindex.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libwritedb.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libvariation.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libvalid.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libvalerr.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libtest_mt.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libtest_boost.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libtaxon1.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libtables.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libsubmit.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libsequtil.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqsplit.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqset.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqmasks_io.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqedit.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqdb.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseqcode.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libseq.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libscoremat.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libpubmed.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libpub.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xreader_id2.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xreader_id1.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xreader_cache.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xreader.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xloader_genbank.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xloader_blastdb_rmt.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libncbi_xloader_blastdb.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libmlacli.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libmla.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libmedline.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libmedlars.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libigblast.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libid2_split.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libid2.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libid1.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libgenome_collection.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libgeneral.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libgene_info.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libgbseq.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libentrez2cli.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libentrez2.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libcreaders.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libconnect.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libcomposition_adjustment.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblastxml2.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblastxml.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblastinput.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblastdb_format.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblastdb.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblast_services.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libblast.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libbiblio.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/lib64/ncbi-blast+/libalign_format.so
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastdbcheck
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/convert2blastmask
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastdb_aliastool
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastdbcmd
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/makeprofiledb
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/makeblastdb
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/windowmasker
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/dustmasker
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/segmasker
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/makembindex
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/deltablast
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blast_formatter
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/rpstblastn
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/rpsblast
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/psiblast
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/tblastx
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/tblastn
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastx
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastn
extracting debug info from /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/bin/blastp
/usr/lib/rpm/sepdebugcrcfix: Updated 96 CRC32s, 0 CRC32s did match.
80194 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: ncbi-blast+-2.2.31-4.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4HuLCQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncbi-blast-2.2.31+-src
+ DOCDIR=/builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/share/doc/ncbi-blast+-2.2.31
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/share/doc/ncbi-blast+-2.2.31
+ cp -pr c++/scripts/projects/blast/ChangeLog /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/share/doc/ncbi-blast+-2.2.31
+ cp -pr c++/scripts/projects/blast/README /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/share/doc/ncbi-blast+-2.2.31
+ cp -pr c++/scripts/projects/blast/LICENSE /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64/usr/share/doc/ncbi-blast+-2.2.31
+ exit 0
Provides: ncbi-blast+ = 2.2.31-4.el7.centos ncbi-blast+(x86-64) = 2.2.31-4.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libnsl.so.1()(64bit) libpcre.so.1()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) perl(Archive::Tar) perl(Digest::MD5) perl(File::Temp) perl(File::stat) perl(Getopt::Long) perl(List::MoreUtils) perl(Net::FTP) perl(Pod::Usage) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH)
Processing files: ncbi-blast+-debuginfo-2.2.31-4.el7.centos.x86_64
Provides: ncbi-blast+-debuginfo = 2.2.31-4.el7.centos ncbi-blast+-debuginfo(x86-64) = 2.2.31-4.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64
Wrote: /builddir/build/RPMS/ncbi-blast+-2.2.31-4.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/ncbi-blast+-debuginfo-2.2.31-4.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aJtHPd
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncbi-blast-2.2.31+-src
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/ncbi-blast+-2.2.31-4.el7.centos.x86_64
+ exit 0
Child return code was: 0