Warning: Permanently added '3.92.189.205' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8384178-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 1.2
PID: 10351
Logging PID: 10352
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 8384178,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'edd59b4ae3aa1ccd6074ec2846ad755964a6f562',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bout++',
 'package_version': '5.2.0.dev574+ge3f21cd2f-1',
 'project_dirname': 'sagitter',
 'project_name': 'sagitter',
 'project_owner': 'davidsch',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/davidsch/sagitter/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/sagitter/ForTesting/fedora-rawhide-aarch64/',
            'id': 'copr_sagitter_ForTesting',
            'name': 'Additional repo copr_sagitter_ForTesting'}],
 'sandbox': 'davidsch/sagitter--davidsch',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'davidsch',
 'tags': [],
 'task_id': '8384178-fedora-rawhide-aarch64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++ /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++ --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++'...

Running: git checkout edd59b4ae3aa1ccd6074ec2846ad755964a6f562 --

cmd: ['git', 'checkout', 'edd59b4ae3aa1ccd6074ec2846ad755964a6f562', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++
rc: 0
stdout: 
stderr: Note: switching to 'edd59b4ae3aa1ccd6074ec2846ad755964a6f562'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at edd59b4 automatic import of bout++

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/davidsch/sagitter/bout++/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz/md5/9ba4a2715a4391e6da27ac26f64eb3f4/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 12.1M  100 12.1M    0     0   290M      0 --:--:-- --:--:-- --:--:--  296M
INFO: Reading stdout from command: md5sum BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734008571.188433 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734008571.188433 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++/bout++.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.9
INFO: Mock Version: 5.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734008571.188433/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734008571.188433/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/8f2136a7e0a951d9dfe12bcc245bdf0dca1d2c4f60f5e7c0f4c1159571dd434c/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/8f2136a7e0a951d9dfe12bcc245bdf0dca1d2c4f60f5e7c0f4c1159571dd434c/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734008571.188433/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.aarch64
  rpm-sequoia-1.7.0-3.fc42.aarch64
  dnf5-5.2.8.1-2.fc42.aarch64
  dnf5-plugins-5.2.8.1-2.fc42.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  28.3 MiB/s |  20.7 MiB |  00m01s
 Copr repository                        100% | 394.1 KiB/s |  12.2 KiB |  00m00s
 Additional repo copr_sagitter_ForTesti 100% |   1.2 MiB/s |  32.2 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                    Repository      Size
Installing group/module packages:
 bash                              aarch64 5.2.37-1.fc42              fedora       8.2 MiB
 bzip2                             aarch64 1.0.8-19.fc41              fedora     427.6 KiB
 coreutils                         aarch64 9.5-11.fc42                fedora       8.1 MiB
 cpio                              aarch64 2.15-2.fc41                fedora       1.2 MiB
 diffutils                         aarch64 3.10-8.fc41                fedora       2.1 MiB
 fedora-release-common             noarch  42-0.11                    fedora      19.8 KiB
 findutils                         aarch64 1:4.10.0-4.fc41            fedora       2.1 MiB
 gawk                              aarch64 5.3.0-4.fc41               fedora       4.2 MiB
 glibc-minimal-langpack            aarch64 2.40.9000-21.fc42          fedora       0.0   B
 grep                              aarch64 3.11-9.fc41                fedora       1.1 MiB
 gzip                              aarch64 1.13-2.fc41                fedora     488.9 KiB
 info                              aarch64 7.1.1-2.fc42               fedora     613.6 KiB
 patch                             aarch64 2.7.6-25.fc41              fedora     390.6 KiB
 redhat-rpm-config                 noarch  296-1.fc42                 fedora     186.6 KiB
 rpm-build                         aarch64 4.20.0-1.fc42              fedora       1.4 MiB
 sed                               aarch64 4.9-3.fc41                 fedora       1.0 MiB
 shadow-utils                      aarch64 2:4.17.0~rc1-1.fc42        fedora       4.5 MiB
 tar                               aarch64 2:1.35-4.fc41              fedora       3.1 MiB
 unzip                             aarch64 6.0-65.fc42                fedora       2.3 MiB
 util-linux                        aarch64 2.40.2-8.fc42              fedora      16.9 MiB
 which                             aarch64 2.21-42.fc41               fedora     248.2 KiB
 xz                                aarch64 1:5.6.3-2.fc42             fedora       1.5 MiB
Installing dependencies:
 add-determinism                   aarch64 0.4.3-1.fc42               fedora       2.1 MiB
 alternatives                      aarch64 1.30-1.fc41                fedora     218.3 KiB
 ansible-srpm-macros               noarch  1-16.fc41                  fedora      35.7 KiB
 audit-libs                        aarch64 4.0.2-1.fc41               fedora     547.4 KiB
 authselect                        aarch64 1.5.0-8.fc42               fedora     309.5 KiB
 authselect-libs                   aarch64 1.5.0-8.fc42               fedora     931.9 KiB
 basesystem                        noarch  11-21.fc41                 fedora       0.0   B
 binutils                          aarch64 2.43.50-9.fc42             fedora      29.4 MiB
 build-reproducibility-srpm-macros noarch  0.4.3-1.fc42               fedora     735.0   B
 bzip2-libs                        aarch64 1.0.8-19.fc41              fedora     200.7 KiB
 ca-certificates                   noarch  2024.2.69_v8.0.401-3.fc42  fedora       2.6 MiB
 coreutils-common                  aarch64 9.5-11.fc42                fedora      11.2 MiB
 cracklib                          aarch64 2.9.11-6.fc41              fedora     935.0 KiB
 crypto-policies                   noarch  20241128-1.gitbb7b0b0.fc42 fedora     137.3 KiB
 curl                              aarch64 8.11.1-1.fc42              fedora     452.0 KiB
 cyrus-sasl-lib                    aarch64 2.1.28-27.fc41             fedora       3.1 MiB
 debugedit                         aarch64 5.1-2.fc42                 fedora     244.2 KiB
 dwz                               aarch64 0.15-8.fc42                fedora     386.8 KiB
 ed                                aarch64 1.20.2-2.fc41              fedora     282.8 KiB
 efi-srpm-macros                   noarch  5-13.fc42                  fedora      40.2 KiB
 elfutils                          aarch64 0.192-7.fc42               fedora       3.1 MiB
 elfutils-debuginfod-client        aarch64 0.192-7.fc42               fedora     141.3 KiB
 elfutils-default-yama-scope       noarch  0.192-7.fc42               fedora       1.8 KiB
 elfutils-libelf                   aarch64 0.192-7.fc42               fedora       1.2 MiB
 elfutils-libs                     aarch64 0.192-7.fc42               fedora     734.9 KiB
 fedora-gpg-keys                   noarch  42-0.3                     fedora     126.4 KiB
 fedora-release                    noarch  42-0.11                    fedora       0.0   B
 fedora-release-identity-basic     noarch  42-0.11                    fedora     719.0   B
 fedora-repos                      noarch  42-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  42-0.3                     fedora       2.2 KiB
 file                              aarch64 5.45-8.fc42                fedora     139.5 KiB
 file-libs                         aarch64 5.45-8.fc42                fedora      10.0 MiB
 filesystem                        aarch64 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch  1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch  0.4.0-1.fc42               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       aarch64 15.2-4.fc42                fedora      12.7 MiB
 gdbm                              aarch64 1:1.23-7.fc41              fedora     928.5 KiB
 gdbm-libs                         aarch64 1:1.23-7.fc41              fedora     426.0 KiB
 ghc-srpm-macros                   noarch  1.9.2-1.fc42               fedora     779.0   B
 glibc                             aarch64 2.40.9000-21.fc42          fedora       6.1 MiB
 glibc-common                      aarch64 2.40.9000-21.fc42          fedora       1.3 MiB
 glibc-gconv-extra                 aarch64 2.40.9000-21.fc42          fedora      18.3 MiB
 gmp                               aarch64 1:6.3.0-2.fc41             fedora     722.0 KiB
 gnat-srpm-macros                  noarch  6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch  3.6.0-5.fc42               fedora      60.8 KiB
 jansson                           aarch64 2.14-1.fc42                fedora     221.3 KiB
 json-c                            aarch64 0.18-1.fc42                fedora     139.2 KiB
 kernel-srpm-macros                noarch  1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     aarch64 1.6.3-4.fc41               fedora     226.4 KiB
 krb5-libs                         aarch64 1.21.3-3.fc42              fedora       2.6 MiB
 libacl                            aarch64 2.3.2-2.fc41               fedora     196.1 KiB
 libarchive                        aarch64 3.7.7-1.fc42               fedora     912.2 KiB
 libattr                           aarch64 2.5.2-4.fc41               fedora     196.6 KiB
 libblkid                          aarch64 2.40.2-8.fc42              fedora     418.6 KiB
 libbrotli                         aarch64 1.1.0-5.fc41               fedora       1.1 MiB
 libcap                            aarch64 2.71-1.fc42                fedora     509.8 KiB
 libcap-ng                         aarch64 0.8.5-3.fc41               fedora     417.2 KiB
 libcom_err                        aarch64 1.47.1-6.fc42              fedora     239.3 KiB
 libcurl                           aarch64 8.11.1-1.fc42              fedora     845.2 KiB
 libeconf                          aarch64 0.7.5-1.fc42               fedora      78.7 KiB
 libevent                          aarch64 2.1.12-14.fc41             fedora       1.5 MiB
 libfdisk                          aarch64 2.40.2-8.fc42              fedora     482.9 KiB
 libffi                            aarch64 3.4.6-3.fc42               fedora     282.4 KiB
 libgcc                            aarch64 14.2.1-6.fc42              fedora     222.2 KiB
 libgomp                           aarch64 14.2.1-6.fc42              fedora     503.2 KiB
 libidn2                           aarch64 2.3.7-2.fc41               fedora     457.2 KiB
 libmount                          aarch64 2.40.2-8.fc42              fedora     483.9 KiB
 libnghttp2                        aarch64 1.64.0-1.fc42              fedora     262.2 KiB
 libnsl2                           aarch64 2.0.1-2.fc41               fedora     222.0 KiB
 libpkgconf                        aarch64 2.3.0-1.fc42               fedora     198.1 KiB
 libpsl                            aarch64 0.21.5-4.fc41              fedora     196.6 KiB
 libpwquality                      aarch64 1.4.5-11.fc41              fedora       1.1 MiB
 libselinux                        aarch64 3.8-0.rc1.2.fc42           fedora     195.6 KiB
 libsemanage                       aarch64 3.8-0.rc1.1.fc42           fedora     353.3 KiB
 libsepol                          aarch64 3.8-0.rc1.1.fc42           fedora     809.9 KiB
 libsmartcols                      aarch64 2.40.2-8.fc42              fedora     288.5 KiB
 libssh                            aarch64 0.11.1-1.fc42              fedora     649.6 KiB
 libssh-config                     noarch  0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         aarch64 14.2.1-6.fc42              fedora       2.8 MiB
 libtasn1                          aarch64 4.19.0-9.fc41              fedora     283.8 KiB
 libtirpc                          aarch64 1.3.6-1.fc42               fedora     212.9 KiB
 libtool-ltdl                      aarch64 2.5.4-1.fc42               fedora      92.1 KiB
 libunistring                      aarch64 1.1-8.fc41                 fedora       1.8 MiB
 libuuid                           aarch64 2.40.2-8.fc42              fedora     197.5 KiB
 libverto                          aarch64 0.3.2-9.fc41               fedora     197.5 KiB
 libxcrypt                         aarch64 4.4.36-11.fc42             fedora     271.5 KiB
 libxml2                           aarch64 2.12.8-2.fc41              fedora       2.1 MiB
 libzstd                           aarch64 1.5.6-2.fc41               fedora     796.0 KiB
 lua-libs                          aarch64 5.4.7-1.fc42               fedora     393.1 KiB
 lua-srpm-macros                   noarch  1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          aarch64 1.10.0-1.fc41              fedora     261.6 KiB
 mpfr                              aarch64 4.2.1-5.fc41               fedora     818.9 KiB
 ncurses-base                      noarch  6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      aarch64 6.5-2.20240629.fc41        fedora       2.2 MiB
 ocaml-srpm-macros                 noarch  10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  2-18.fc41                  fedora     112.0   B
 openldap                          aarch64 2.6.8-6.fc42               fedora     747.0 KiB
 openssl-libs                      aarch64 1:3.2.2-8.fc42             fedora       7.2 MiB
 p11-kit                           aarch64 0.25.5-4.fc42              fedora       2.6 MiB
 p11-kit-trust                     aarch64 0.25.5-4.fc42              fedora     655.7 KiB
 package-notes-srpm-macros         noarch  0.5-12.fc41                fedora       1.6 KiB
 pam                               aarch64 1.7.0-3.fc42               fedora       4.3 MiB
 pam-libs                          aarch64 1.7.0-3.fc42               fedora     223.4 KiB
 pcre2                             aarch64 10.44-1.fc41.1             fedora     905.5 KiB
 pcre2-syntax                      noarch  10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch  1-56.fc41                  fedora     861.0   B
 pkgconf                           aarch64 2.3.0-1.fc42               fedora     240.6 KiB
 pkgconf-m4                        noarch  2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                aarch64 2.3.0-1.fc42               fedora     990.0   B
 popt                              aarch64 1.19-7.fc41                fedora     272.9 KiB
 publicsuffix-list-dafsa           noarch  20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch  1.16.3-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch  3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch  5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch  6.8.1-4.fc42               fedora     456.0   B
 readline                          aarch64 8.2-11.fc42                fedora     753.3 KiB
 rpm                               aarch64 4.20.0-1.fc42              fedora       3.9 MiB
 rpm-build-libs                    aarch64 4.20.0-1.fc42              fedora     262.7 KiB
 rpm-libs                          aarch64 4.20.0-1.fc42              fedora     797.9 KiB
 rpm-sequoia                       aarch64 1.7.0-3.fc42               fedora       2.2 MiB
 rust-srpm-macros                  noarch  26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch  2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       aarch64 3.47.2-1.fc42              fedora       1.4 MiB
 systemd-libs                      aarch64 257-1.fc42                 fedora       2.4 MiB
 util-linux-core                   aarch64 2.40.2-8.fc42              fedora       6.2 MiB
 xxhash-libs                       aarch64 0.8.2-4.fc42               fedora     212.3 KiB
 xz-libs                           aarch64 1:5.6.3-2.fc42             fedora     266.4 KiB
 zig-srpm-macros                   noarch  1-3.fc41                   fedora       1.1 KiB
 zip                               aarch64 3.0-42.fc42                fedora     755.7 KiB
 zlib-ng-compat                    aarch64 2.2.2-1.fc42               fedora     133.8 KiB
 zstd                              aarch64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:
 Buildsystem building group                                                               

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 51 MiB. Need to download 51 MiB.
After this operation, 237 MiB extra will be used (install 237 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.aarch64 100% |   3.9 MiB/s |  52.4 KiB |  00m00s
[  2/154] bash-0:5.2.37-1.fc42.aarch64  100% |  94.3 MiB/s |   1.8 MiB |  00m00s
[  3/154] cpio-0:2.15-2.fc41.aarch64    100% |  47.4 MiB/s | 291.3 KiB |  00m00s
[  4/154] coreutils-0:9.5-11.fc42.aarch 100% |  48.2 MiB/s |   1.1 MiB |  00m00s
[  5/154] diffutils-0:3.10-8.fc41.aarch 100% |  98.4 MiB/s | 402.9 KiB |  00m00s
[  6/154] fedora-release-common-0:42-0. 100% |   7.8 MiB/s |  23.9 KiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.aar 100% | 135.3 MiB/s | 554.1 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.40 100% |  39.3 MiB/s | 120.6 KiB |  00m00s
[  9/154] gawk-0:5.3.0-4.fc41.aarch64   100% | 176.2 MiB/s |   1.1 MiB |  00m00s
[ 10/154] grep-0:3.11-9.fc41.aarch64    100% |  58.2 MiB/s | 297.9 KiB |  00m00s
[ 11/154] gzip-0:1.13-2.fc41.aarch64    100% |  33.0 MiB/s | 169.1 KiB |  00m00s
[ 12/154] info-0:7.1.1-2.fc42.aarch64   100% |  44.3 MiB/s | 181.3 KiB |  00m00s
[ 13/154] patch-0:2.7.6-25.fc41.aarch64 100% |  62.9 MiB/s | 128.8 KiB |  00m00s
[ 14/154] redhat-rpm-config-0:296-1.fc4 100% |  26.8 MiB/s |  82.4 KiB |  00m00s
[ 15/154] rpm-build-0:4.20.0-1.fc42.aar 100% |  41.1 MiB/s |  84.1 KiB |  00m00s
[ 16/154] sed-0:4.9-3.fc41.aarch64      100% | 102.7 MiB/s | 315.4 KiB |  00m00s
[ 17/154] tar-2:1.35-4.fc41.aarch64     100% | 166.9 MiB/s | 854.7 KiB |  00m00s
[ 18/154] unzip-0:6.0-65.fc42.aarch64   100% |  36.2 MiB/s | 185.5 KiB |  00m00s
[ 19/154] shadow-utils-2:4.17.0~rc1-1.f 100% | 142.3 MiB/s |   1.3 MiB |  00m00s
[ 20/154] which-0:2.21-42.fc41.aarch64  100% |  20.2 MiB/s |  41.5 KiB |  00m00s
[ 21/154] util-linux-0:2.40.2-8.fc42.aa 100% | 195.4 MiB/s |   1.2 MiB |  00m00s
[ 22/154] xz-1:5.6.3-2.fc42.aarch64     100% |  93.0 MiB/s | 476.1 KiB |  00m00s
[ 23/154] filesystem-0:3.18-29.fc42.aar 100% | 135.8 MiB/s |   1.1 MiB |  00m00s
[ 24/154] ncurses-libs-0:6.5-2.20240629 100% |  63.8 MiB/s | 326.5 KiB |  00m00s
[ 25/154] bzip2-libs-0:1.0.8-19.fc41.aa 100% |  41.7 MiB/s |  42.7 KiB |  00m00s
[ 26/154] glibc-0:2.40.9000-21.fc42.aar 100% | 139.4 MiB/s |   1.8 MiB |  00m00s
[ 27/154] gmp-1:6.3.0-2.fc41.aarch64    100% |  44.0 MiB/s | 270.1 KiB |  00m00s
[ 28/154] libacl-0:2.3.2-2.fc41.aarch64 100% |  12.2 MiB/s |  24.9 KiB |  00m00s
[ 29/154] libattr-0:2.5.2-4.fc41.aarch6 100% |  17.8 MiB/s |  18.2 KiB |  00m00s
[ 30/154] coreutils-common-0:9.5-11.fc4 100% | 151.6 MiB/s |   2.1 MiB |  00m00s
[ 31/154] libcap-0:2.71-1.fc42.aarch64  100% |  17.0 MiB/s |  86.8 KiB |  00m00s
[ 32/154] libselinux-0:3.8-0.rc1.2.fc42 100% |  17.6 MiB/s |  90.4 KiB |  00m00s
[ 33/154] fedora-repos-0:42-0.3.noarch  100% |   9.0 MiB/s |   9.2 KiB |  00m00s
[ 34/154] systemd-libs-0:257-1.fc42.aar 100% | 146.4 MiB/s | 749.6 KiB |  00m00s
[ 35/154] mpfr-0:4.2.1-5.fc41.aarch64   100% |  52.9 MiB/s | 324.8 KiB |  00m00s
[ 36/154] openssl-libs-1:3.2.2-8.fc42.a 100% | 198.9 MiB/s |   2.2 MiB |  00m00s
[ 37/154] readline-0:8.2-11.fc42.aarch6 100% |  34.6 MiB/s | 212.7 KiB |  00m00s
[ 38/154] glibc-common-0:2.40.9000-21.f 100% |  93.6 MiB/s | 383.6 KiB |  00m00s
[ 39/154] pcre2-0:10.44-1.fc41.1.aarch6 100% | 110.8 MiB/s | 227.0 KiB |  00m00s
[ 40/154] ed-0:1.20.2-2.fc41.aarch64    100% |  39.6 MiB/s |  81.2 KiB |  00m00s
[ 41/154] ansible-srpm-macros-0:1-16.fc 100% |  10.1 MiB/s |  20.8 KiB |  00m00s
[ 42/154] build-reproducibility-srpm-ma 100% |   5.5 MiB/s |  11.2 KiB |  00m00s
[ 43/154] efi-srpm-macros-0:5-13.fc42.n 100% |  21.9 MiB/s |  22.5 KiB |  00m00s
[ 44/154] dwz-0:0.15-8.fc42.aarch64     100% |  67.0 MiB/s | 137.3 KiB |  00m00s
[ 45/154] file-0:5.45-8.fc42.aarch64    100% |  47.8 MiB/s |  49.0 KiB |  00m00s
[ 46/154] fonts-srpm-macros-1:2.0.5-17. 100% |  26.3 MiB/s |  27.0 KiB |  00m00s
[ 47/154] forge-srpm-macros-0:0.4.0-1.f 100% |  19.3 MiB/s |  19.8 KiB |  00m00s
[ 48/154] fpc-srpm-macros-0:1.3-13.fc41 100% |   7.8 MiB/s |   8.0 KiB |  00m00s
[ 49/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% |   8.9 MiB/s |   9.1 KiB |  00m00s
[ 50/154] gnat-srpm-macros-0:6-6.fc41.n 100% |   4.4 MiB/s |   9.0 KiB |  00m00s
[ 51/154] kernel-srpm-macros-0:1.0-24.f 100% |   9.6 MiB/s |   9.9 KiB |  00m00s
[ 52/154] go-srpm-macros-0:3.6.0-5.fc42 100% |  13.7 MiB/s |  28.0 KiB |  00m00s
[ 53/154] lua-srpm-macros-0:1-14.fc41.n 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[ 54/154] ocaml-srpm-macros-0:10-3.fc41 100% |   9.0 MiB/s |   9.2 KiB |  00m00s
[ 55/154] openblas-srpm-macros-0:2-18.f 100% |   7.5 MiB/s |   7.7 KiB |  00m00s
[ 56/154] package-notes-srpm-macros-0:0 100% |   4.8 MiB/s |   9.8 KiB |  00m00s
[ 57/154] perl-srpm-macros-0:1-56.fc41. 100% |   4.2 MiB/s |   8.5 KiB |  00m00s
[ 58/154] pyproject-srpm-macros-0:1.16. 100% |  13.5 MiB/s |  13.9 KiB |  00m00s
[ 59/154] python-srpm-macros-0:3.13-3.f 100% |  11.6 MiB/s |  23.7 KiB |  00m00s
[ 60/154] qt5-srpm-macros-0:5.15.15-1.f 100% |   4.3 MiB/s |   8.9 KiB |  00m00s
[ 61/154] qt6-srpm-macros-0:6.8.1-4.fc4 100% |   4.5 MiB/s |   9.3 KiB |  00m00s
[ 62/154] zig-srpm-macros-0:1-3.fc41.no 100% |   7.9 MiB/s |   8.1 KiB |  00m00s
[ 63/154] rust-srpm-macros-0:26.3-3.fc4 100% |   5.9 MiB/s |  12.1 KiB |  00m00s
[ 64/154] rpm-0:4.20.0-1.fc42.aarch64   100% | 134.0 MiB/s | 549.0 KiB |  00m00s
[ 65/154] zip-0:3.0-42.fc42.aarch64     100% |  83.0 MiB/s | 255.1 KiB |  00m00s
[ 66/154] debugedit-0:5.1-2.fc42.aarch6 100% |  19.2 MiB/s |  78.8 KiB |  00m00s
[ 67/154] elfutils-0:0.192-7.fc42.aarch 100% |  81.2 MiB/s | 499.1 KiB |  00m00s
[ 68/154] elfutils-libelf-0:0.192-7.fc4 100% |  40.1 MiB/s | 205.2 KiB |  00m00s
[ 69/154] pkgconf-pkg-config-0:2.3.0-1. 100% |   3.2 MiB/s |  10.0 KiB |  00m00s
[ 70/154] libarchive-0:3.7.7-1.fc42.aar 100% |  57.1 MiB/s | 409.1 KiB |  00m00s
[ 71/154] popt-0:1.19-7.fc41.aarch64    100% |  21.5 MiB/s |  66.0 KiB |  00m00s
[ 72/154] rpm-build-libs-0:4.20.0-1.fc4 100% |  31.0 MiB/s |  95.1 KiB |  00m00s
[ 73/154] rpm-libs-0:4.20.0-1.fc42.aarc 100% |  98.6 MiB/s | 302.8 KiB |  00m00s
[ 74/154] zstd-0:1.5.6-2.fc41.aarch64   100% | 111.5 MiB/s | 456.8 KiB |  00m00s
[ 75/154] libeconf-0:0.7.5-1.fc42.aarch 100% |  16.3 MiB/s |  33.4 KiB |  00m00s
[ 76/154] libsemanage-0:3.8-0.rc1.1.fc4 100% | 109.5 MiB/s | 112.1 KiB |  00m00s
[ 77/154] libxcrypt-0:4.4.36-11.fc42.aa 100% |  59.7 MiB/s | 122.4 KiB |  00m00s
[ 78/154] pam-libs-0:1.7.0-3.fc42.aarch 100% |  56.6 MiB/s |  58.0 KiB |  00m00s
[ 79/154] audit-libs-0:4.0.2-1.fc41.aar 100% |   3.2 MiB/s | 126.6 KiB |  00m00s
[ 80/154] setup-0:2.15.0-5.fc41.noarch  100% |   5.4 MiB/s | 154.4 KiB |  00m00s
[ 81/154] binutils-0:2.43.50-9.fc42.aar 100% |  88.4 MiB/s |   6.2 MiB |  00m00s
[ 82/154] libblkid-0:2.40.2-8.fc42.aarc 100% |  15.2 MiB/s | 124.3 KiB |  00m00s
[ 83/154] authselect-libs-0:1.5.0-8.fc4 100% |  23.7 MiB/s | 218.0 KiB |  00m00s
[ 84/154] libcap-ng-0:0.8.5-3.fc41.aarc 100% |  10.7 MiB/s |  32.8 KiB |  00m00s
[ 85/154] libmount-0:2.40.2-8.fc42.aarc 100% |  75.5 MiB/s | 154.6 KiB |  00m00s
[ 86/154] libfdisk-0:2.40.2-8.fc42.aarc 100% |  38.0 MiB/s | 155.7 KiB |  00m00s
[ 87/154] libsmartcols-0:2.40.2-8.fc42. 100% |  27.0 MiB/s |  82.9 KiB |  00m00s
[ 88/154] libuuid-0:2.40.2-8.fc42.aarch 100% |   9.6 MiB/s |  29.5 KiB |  00m00s
[ 89/154] pam-0:1.7.0-3.fc42.aarch64    100% |  91.0 MiB/s | 559.4 KiB |  00m00s
[ 90/154] util-linux-core-0:2.40.2-8.fc 100% | 129.9 MiB/s | 532.1 KiB |  00m00s
[ 91/154] zlib-ng-compat-0:2.2.2-1.fc42 100% |  16.0 MiB/s |  65.7 KiB |  00m00s
[ 92/154] xz-libs-1:5.6.3-2.fc42.aarch6 100% |  54.2 MiB/s | 111.1 KiB |  00m00s
[ 93/154] basesystem-0:11-21.fc41.noarc 100% |   3.6 MiB/s |   7.4 KiB |  00m00s
[ 94/154] glibc-gconv-extra-0:2.40.9000 100% | 259.7 MiB/s |   1.6 MiB |  00m00s
[ 95/154] ncurses-base-0:6.5-2.20240629 100% |  21.6 MiB/s |  88.4 KiB |  00m00s
[ 96/154] libgcc-0:14.2.1-6.fc42.aarch6 100% |  19.2 MiB/s | 118.2 KiB |  00m00s
[ 97/154] crypto-policies-0:20241128-1. 100% |  48.0 MiB/s |  98.4 KiB |  00m00s
[ 98/154] ca-certificates-0:2024.2.69_v 100% | 230.6 MiB/s | 944.5 KiB |  00m00s
[ 99/154] libsepol-0:3.8-0.rc1.1.fc42.a 100% |  53.6 MiB/s | 329.4 KiB |  00m00s
[100/154] fedora-repos-rawhide-0:42-0.3 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[101/154] fedora-gpg-keys-0:42-0.3.noar 100% |  32.6 MiB/s | 133.6 KiB |  00m00s
[102/154] pcre2-syntax-0:10.44-1.fc41.1 100% |  73.2 MiB/s | 149.9 KiB |  00m00s
[103/154] add-determinism-0:0.4.3-1.fc4 100% | 164.3 MiB/s | 841.1 KiB |  00m00s
[104/154] file-libs-0:5.45-8.fc42.aarch 100% | 123.9 MiB/s | 761.3 KiB |  00m00s
[105/154] curl-0:8.11.1-1.fc42.aarch64  100% |  42.3 MiB/s | 216.5 KiB |  00m00s
[106/154] alternatives-0:1.30-1.fc41.aa 100% |  20.3 MiB/s |  41.5 KiB |  00m00s
[107/154] elfutils-debuginfod-client-0: 100% |  42.5 MiB/s |  43.5 KiB |  00m00s
[108/154] jansson-0:2.14-1.fc42.aarch64 100% |  45.8 MiB/s |  46.9 KiB |  00m00s
[109/154] elfutils-libs-0:0.192-7.fc42. 100% | 122.6 MiB/s | 251.0 KiB |  00m00s
[110/154] libstdc++-0:14.2.1-6.fc42.aar 100% | 162.9 MiB/s | 834.1 KiB |  00m00s
[111/154] libzstd-0:1.5.6-2.fc41.aarch6 100% |  70.3 MiB/s | 288.0 KiB |  00m00s
[112/154] libxml2-0:2.12.8-2.fc41.aarch 100% | 165.5 MiB/s | 677.8 KiB |  00m00s
[113/154] lz4-libs-0:1.10.0-1.fc41.aarc 100% |  23.5 MiB/s |  72.3 KiB |  00m00s
[114/154] pkgconf-0:2.3.0-1.fc42.aarch6 100% |  22.1 MiB/s |  45.2 KiB |  00m00s
[115/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% |  14.0 MiB/s |  14.3 KiB |  00m00s
[116/154] libgomp-0:14.2.1-6.fc42.aarch 100% |  84.6 MiB/s | 346.4 KiB |  00m00s
[117/154] lua-libs-0:5.4.7-1.fc42.aarch 100% |  31.7 MiB/s | 129.7 KiB |  00m00s
[118/154] rpm-sequoia-0:1.7.0-3.fc42.aa 100% | 152.9 MiB/s | 782.6 KiB |  00m00s
[119/154] authselect-0:1.5.0-8.fc42.aar 100% |  47.5 MiB/s | 145.8 KiB |  00m00s
[120/154] sqlite-libs-0:3.47.2-1.fc42.a 100% | 134.1 MiB/s | 686.5 KiB |  00m00s
[121/154] gdbm-1:1.23-7.fc41.aarch64    100% |  37.0 MiB/s | 151.6 KiB |  00m00s
[122/154] gdbm-libs-1:1.23-7.fc41.aarch 100% |  18.3 MiB/s |  56.3 KiB |  00m00s
[123/154] libnsl2-0:2.0.1-2.fc41.aarch6 100% |  14.7 MiB/s |  30.1 KiB |  00m00s
[124/154] libpwquality-0:1.4.5-11.fc41. 100% |  58.5 MiB/s | 119.8 KiB |  00m00s
[125/154] libtirpc-0:1.3.6-1.fc42.aarch 100% |  46.6 MiB/s |  95.4 KiB |  00m00s
[126/154] libffi-0:3.4.6-3.fc42.aarch64 100% |  37.4 MiB/s |  38.3 KiB |  00m00s
[127/154] json-c-0:0.18-1.fc42.aarch64  100% |  44.3 MiB/s |  45.4 KiB |  00m00s
[128/154] p11-kit-0:0.25.5-4.fc42.aarch 100% | 155.7 MiB/s | 478.3 KiB |  00m00s
[129/154] p11-kit-trust-0:0.25.5-4.fc42 100% |  43.8 MiB/s | 134.4 KiB |  00m00s
[130/154] elfutils-default-yama-scope-0 100% |   4.1 MiB/s |  12.5 KiB |  00m00s
[131/154] libpkgconf-0:2.3.0-1.fc42.aar 100% |  12.5 MiB/s |  38.4 KiB |  00m00s
[132/154] cracklib-0:2.9.11-6.fc41.aarc 100% |  22.6 MiB/s |  92.6 KiB |  00m00s
[133/154] libcom_err-0:1.47.1-6.fc42.aa 100% |  13.1 MiB/s |  26.9 KiB |  00m00s
[134/154] libtasn1-0:4.19.0-9.fc41.aarc 100% |  35.6 MiB/s |  73.0 KiB |  00m00s
[135/154] krb5-libs-0:1.21.3-3.fc42.aar 100% | 124.6 MiB/s | 765.5 KiB |  00m00s
[136/154] keyutils-libs-0:1.6.3-4.fc41. 100% |  10.4 MiB/s |  31.9 KiB |  00m00s
[137/154] libverto-0:0.3.2-9.fc41.aarch 100% |  10.2 MiB/s |  20.9 KiB |  00m00s
[138/154] fedora-release-0:42-0.11.noar 100% |  12.7 MiB/s |  13.0 KiB |  00m00s
[139/154] xxhash-libs-0:0.8.2-4.fc42.aa 100% |  11.3 MiB/s |  34.6 KiB |  00m00s
[140/154] fedora-release-identity-basic 100% |   4.5 MiB/s |  13.8 KiB |  00m00s
[141/154] libcurl-0:8.11.1-1.fc42.aarch 100% | 114.3 MiB/s | 351.0 KiB |  00m00s
[142/154] libbrotli-0:1.1.0-5.fc41.aarc 100% |  67.6 MiB/s | 346.2 KiB |  00m00s
[143/154] libidn2-0:2.3.7-2.fc41.aarch6 100% |  29.0 MiB/s | 118.8 KiB |  00m00s
[144/154] libnghttp2-0:1.64.0-1.fc42.aa 100% |  25.0 MiB/s |  76.8 KiB |  00m00s
[145/154] gdb-minimal-0:15.2-4.fc42.aar 100% | 216.3 MiB/s |   3.9 MiB |  00m00s
[146/154] libpsl-0:0.21.5-4.fc41.aarch6 100% |  12.6 MiB/s |  64.4 KiB |  00m00s
[147/154] libssh-0:0.11.1-1.fc42.aarch6 100% |  45.5 MiB/s | 233.0 KiB |  00m00s
[148/154] openldap-0:2.6.8-6.fc42.aarch 100% |  77.8 MiB/s | 239.0 KiB |  00m00s
[149/154] publicsuffix-list-dafsa-0:202 100% |  28.5 MiB/s |  58.3 KiB |  00m00s
[150/154] libunistring-0:1.1-8.fc41.aar 100% | 105.4 MiB/s | 539.8 KiB |  00m00s
[151/154] libssh-config-0:0.11.1-1.fc42 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[152/154] libtool-ltdl-0:2.5.4-1.fc42.a 100% |  16.5 MiB/s |  33.8 KiB |  00m00s
[153/154] libevent-0:2.1.12-14.fc41.aar 100% |  82.9 MiB/s | 254.6 KiB |  00m00s
[154/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 108.8 MiB/s | 780.2 KiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% | 116.5 MiB/s |  51.2 MiB |  00m00s
Running transaction
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 733.0   B/s | 154.0   B |  00m00s
[  2/156] Prepare transaction           100% |   2.4 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.2.1-6. 100% | 109.3 MiB/s | 223.9 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/156] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.4 KiB |  00m00s
[  8/156] Installing fedora-gpg-keys-0: 100% |  28.0 MiB/s | 172.2 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  41.7 MiB/s | 726.1 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/156] Installing filesystem-0:3.18- 100% |   2.5 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  57.2 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% | 281.1 MiB/s |   2.2 MiB |  00m00s
[ 20/156] Installing glibc-0:2.40.9000- 100% | 245.6 MiB/s |   6.1 MiB |  00m00s
[ 21/156] Installing bash-0:5.2.37-1.fc 100% | 329.2 MiB/s |   8.2 MiB |  00m00s
[ 22/156] Installing glibc-common-0:2.4 100% | 163.8 MiB/s |   1.3 MiB |  00m00s
[ 23/156] Installing glibc-gconv-extra- 100% | 368.7 MiB/s |  18.4 MiB |  00m00s
[ 24/156] Installing zlib-ng-compat-0:2 100% | 131.5 MiB/s | 134.6 KiB |  00m00s
[ 25/156] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB |  00m00s
[ 26/156] Installing xz-libs-1:5.6.3-2. 100% | 261.2 MiB/s | 267.5 KiB |  00m00s
[ 27/156] Installing readline-0:8.2-11. 100% | 245.9 MiB/s | 755.5 KiB |  00m00s
[ 28/156] Installing popt-0:1.19-7.fc41 100% |  91.0 MiB/s | 279.5 KiB |  00m00s
[ 29/156] Installing libuuid-0:2.40.2-8 100% | 194.0 MiB/s | 198.6 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 204.9 MiB/s | 419.7 KiB |  00m00s
[ 31/156] Installing gmp-1:6.3.0-2.fc41 100% | 235.8 MiB/s | 724.2 KiB |  00m00s
[ 32/156] Installing libattr-0:2.5.2-4. 100% | 192.9 MiB/s | 197.5 KiB |  00m00s
[ 33/156] Installing libacl-0:2.3.2-2.f 100% | 192.3 MiB/s | 196.9 KiB |  00m00s
[ 34/156] Installing libxcrypt-0:4.4.36 100% | 133.9 MiB/s | 274.2 KiB |  00m00s
[ 35/156] Installing libstdc++-0:14.2.1 100% | 307.0 MiB/s |   2.8 MiB |  00m00s
[ 36/156] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.3 KiB |  00m00s
[ 37/156] Installing elfutils-libelf-0: 100% | 296.6 MiB/s |   1.2 MiB |  00m00s
[ 38/156] Installing libeconf-0:0.7.5-1 100% |  78.5 MiB/s |  80.3 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 417.7 MiB/s | 427.7 KiB |  00m00s
[ 40/156] Installing dwz-0:0.15-8.fc42. 100% | 189.5 MiB/s | 388.2 KiB |  00m00s
[ 41/156] Installing mpfr-0:4.2.1-5.fc4 100% | 267.1 MiB/s | 820.5 KiB |  00m00s
[ 42/156] Installing gawk-0:5.3.0-4.fc4 100% | 387.6 MiB/s |   4.3 MiB |  00m00s
[ 43/156] Installing unzip-0:6.0-65.fc4 100% | 570.7 MiB/s |   2.3 MiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-8 100% | 586.0 MiB/s |  10.0 MiB |  00m00s
[ 45/156] Installing file-0:5.45-8.fc42 100% |  17.2 MiB/s | 141.0 KiB |  00m00s
[ 46/156] Installing crypto-policies-0: 100% |  22.8 MiB/s | 163.7 KiB |  00m00s
[ 47/156] Installing pcre2-0:10.44-1.fc 100% | 295.2 MiB/s | 906.9 KiB |  00m00s
[ 48/156] Installing grep-0:3.11-9.fc41 100% | 156.7 MiB/s |   1.1 MiB |  00m00s
[ 49/156] Installing xz-1:5.6.3-2.fc42. 100% | 188.8 MiB/s |   1.5 MiB |  00m00s
[ 50/156] Installing libcap-ng-0:0.8.5- 100% | 409.3 MiB/s | 419.1 KiB |  00m00s
[ 51/156] Installing audit-libs-0:4.0.2 100% | 268.3 MiB/s | 549.6 KiB |  00m00s
[ 52/156] Installing pam-libs-0:1.7.0-3 100% | 220.4 MiB/s | 225.6 KiB |  00m00s
[ 53/156] Installing libcap-0:2.71-1.fc 100% | 167.6 MiB/s | 514.8 KiB |  00m00s
[ 54/156] Installing systemd-libs-0:257 100% | 269.1 MiB/s |   2.4 MiB |  00m00s
[ 55/156] Installing libsmartcols-0:2.4 100% | 282.9 MiB/s | 289.7 KiB |  00m00s
[ 56/156] Installing libsepol-0:3.8-0.r 100% | 264.0 MiB/s | 810.9 KiB |  00m00s
[ 57/156] Installing libselinux-0:3.8-0 100% |  96.1 MiB/s | 196.8 KiB |  00m00s
[ 58/156] Installing sed-0:4.9-3.fc41.a 100% | 164.3 MiB/s |   1.0 MiB |  00m00s
[ 59/156] Installing findutils-1:4.10.0 100% | 263.5 MiB/s |   2.1 MiB |  00m00s
[ 60/156] Installing libmount-0:2.40.2- 100% | 236.8 MiB/s | 485.1 KiB |  00m00s
[ 61/156] Installing alternatives-0:1.3 100% | 214.7 MiB/s | 219.9 KiB |  00m00s
[ 62/156] Installing lz4-libs-0:1.10.0- 100% | 256.5 MiB/s | 262.7 KiB |  00m00s
[ 63/156] Installing lua-libs-0:5.4.7-1 100% | 192.5 MiB/s | 394.3 KiB |  00m00s
[ 64/156] Installing libffi-0:3.4.6-3.f 100% | 277.2 MiB/s | 283.8 KiB |  00m00s
[ 65/156] Installing libcom_err-0:1.47. 100% | 234.8 MiB/s | 240.4 KiB |  00m00s
[ 66/156] Installing libtasn1-0:4.19.0- 100% | 139.4 MiB/s | 285.6 KiB |  00m00s
[ 67/156] Installing p11-kit-0:0.25.5-4 100% | 220.5 MiB/s |   2.6 MiB |  00m00s
[ 68/156] Installing libunistring-0:1.1 100% | 301.5 MiB/s |   1.8 MiB |  00m00s
[ 69/156] Installing libidn2-0:2.3.7-2. 100% | 113.1 MiB/s | 463.1 KiB |  00m00s
[ 70/156] Installing libpsl-0:0.21.5-4. 100% | 193.1 MiB/s | 197.7 KiB |  00m00s
[ 71/156] Installing p11-kit-trust-0:0. 100% |  71.3 MiB/s | 657.4 KiB |  00m00s
[ 72/156] Installing zstd-0:1.5.6-2.fc4 100% | 241.6 MiB/s |   1.7 MiB |  00m00s
[ 73/156] Installing util-linux-core-0: 100% | 387.7 MiB/s |   6.2 MiB |  00m00s
[ 74/156] Installing tar-2:1.35-4.fc41. 100% | 278.8 MiB/s |   3.1 MiB |  00m00s
[ 75/156] Installing libsemanage-0:3.8- 100% | 115.6 MiB/s | 355.0 KiB |  00m00s
[ 76/156] Installing shadow-utils-2:4.1 100% | 182.5 MiB/s |   4.6 MiB |  00m00s
[ 77/156] Installing zip-0:3.0-42.fc42. 100% | 247.3 MiB/s | 759.6 KiB |  00m00s
[ 78/156] Installing gdbm-1:1.23-7.fc41 100% | 227.9 MiB/s | 933.4 KiB |  00m00s
[ 79/156] Installing cyrus-sasl-lib-0:2 100% | 310.7 MiB/s |   3.1 MiB |  00m00s
[ 80/156] Installing libfdisk-0:2.40.2- 100% | 236.3 MiB/s | 483.9 KiB |  00m00s
[ 81/156] Installing libxml2-0:2.12.8-2 100% | 306.0 MiB/s |   2.1 MiB |  00m00s
[ 82/156] Installing bzip2-0:1.0.8-19.f 100% | 211.0 MiB/s | 432.2 KiB |  00m00s
[ 83/156] Installing add-determinism-0: 100% | 299.6 MiB/s |   2.1 MiB |  00m00s
[ 84/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 85/156] Installing sqlite-libs-0:3.47 100% | 235.8 MiB/s |   1.4 MiB |  00m00s
[ 86/156] Installing ed-0:1.20.2-2.fc41 100% | 139.2 MiB/s | 285.1 KiB |  00m00s
[ 87/156] Installing patch-0:2.7.6-25.f 100% | 191.5 MiB/s | 392.1 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
[ 89/156] Installing elfutils-libs-0:0. 100% | 179.8 MiB/s | 736.6 KiB |  00m00s
[ 90/156] Installing cpio-0:2.15-2.fc41 100% | 203.4 MiB/s |   1.2 MiB |  00m00s
[ 91/156] Installing diffutils-0:3.10-8 100% | 263.7 MiB/s |   2.1 MiB |  00m00s
[ 92/156] Installing jansson-0:2.14-1.f 100% | 217.4 MiB/s | 222.6 KiB |  00m00s
[ 93/156] Installing libgomp-0:14.2.1-6 100% | 246.4 MiB/s | 504.6 KiB |  00m00s
[ 94/156] Installing json-c-0:0.18-1.fc 100% | 137.2 MiB/s | 140.5 KiB |  00m00s
[ 95/156] Installing libpkgconf-0:2.3.0 100% | 194.6 MiB/s | 199.2 KiB |  00m00s
[ 96/156] Installing pkgconf-0:2.3.0-1. 100% | 237.4 MiB/s | 243.1 KiB |  00m00s
[ 97/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[ 98/156] Installing keyutils-libs-0:1. 100% | 222.5 MiB/s | 227.9 KiB |  00m00s
[ 99/156] Installing libverto-0:0.3.2-9 100% | 194.7 MiB/s | 199.3 KiB |  00m00s
[100/156] Installing xxhash-libs-0:0.8. 100% | 208.7 MiB/s | 213.7 KiB |  00m00s
[101/156] Installing libbrotli-0:1.1.0- 100% | 285.2 MiB/s |   1.1 MiB |  00m00s
[102/156] Installing libnghttp2-0:1.64. 100% | 257.1 MiB/s | 263.3 KiB |  00m00s
[103/156] Installing libtool-ltdl-0:2.5 100% |  91.0 MiB/s |  93.2 KiB |  00m00s
[104/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[105/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[106/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[107/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[108/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[109/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[110/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[111/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[112/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[113/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[114/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[115/156] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[116/156] Installing coreutils-common-0 100% | 302.4 MiB/s |  11.2 MiB |  00m00s
[117/156] Installing openssl-libs-1:3.2 100% | 327.8 MiB/s |   7.2 MiB |  00m00s
[118/156] Installing coreutils-0:9.5-11 100% | 261.6 MiB/s |   8.1 MiB |  00m00s
[119/156] Installing ca-certificates-0: 100% |   1.4 MiB/s |   2.4 MiB |  00m02s
[120/156] Installing krb5-libs-0:1.21.3 100% | 216.6 MiB/s |   2.6 MiB |  00m00s
[121/156] Installing libarchive-0:3.7.7 100% | 223.2 MiB/s | 914.1 KiB |  00m00s
[122/156] Installing libtirpc-0:1.3.6-1 100% | 104.8 MiB/s | 214.7 KiB |  00m00s
[123/156] Installing gzip-0:1.13-2.fc41 100% | 160.9 MiB/s | 494.4 KiB |  00m00s
[124/156] Installing authselect-libs-0: 100% | 132.1 MiB/s | 946.8 KiB |  00m00s
[125/156] Installing cracklib-0:2.9.11- 100% | 154.0 MiB/s | 946.3 KiB |  00m00s
[126/156] Installing libpwquality-0:1.4 100% | 158.2 MiB/s |   1.1 MiB |  00m00s
[127/156] Installing libnsl2-0:2.0.1-2. 100% | 109.0 MiB/s | 223.2 KiB |  00m00s
[128/156] Installing pam-0:1.7.0-3.fc42 100% | 215.1 MiB/s |   4.3 MiB |  00m00s
[129/156] Installing libssh-0:0.11.1-1. 100% | 212.1 MiB/s | 651.7 KiB |  00m00s
[130/156] Installing rpm-sequoia-0:1.7. 100% | 277.8 MiB/s |   2.2 MiB |  00m00s
[131/156] Installing rpm-libs-0:4.20.0- 100% | 195.2 MiB/s | 799.4 KiB |  00m00s
[132/156] Installing rpm-build-libs-0:4 100% | 128.7 MiB/s | 263.6 KiB |  00m00s
[133/156] Installing libevent-0:2.1.12- 100% | 304.7 MiB/s |   1.5 MiB |  00m00s
[134/156] Installing openldap-0:2.6.8-6 100% | 183.3 MiB/s | 750.8 KiB |  00m00s
[135/156] Installing libcurl-0:8.11.1-1 100% | 275.5 MiB/s | 846.3 KiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[137/156] Installing binutils-0:2.43.50 100% | 319.7 MiB/s |  29.4 MiB |  00m00s
[138/156] Installing elfutils-0:0.192-7 100% | 281.5 MiB/s |   3.1 MiB |  00m00s
[139/156] Installing gdb-minimal-0:15.2 100% | 294.6 MiB/s |  12.7 MiB |  00m00s
[140/156] Installing debugedit-0:5.1-2. 100% | 120.6 MiB/s | 246.9 KiB |  00m00s
[141/156] Installing curl-0:8.11.1-1.fc 100% |  37.0 MiB/s | 454.4 KiB |  00m00s
[142/156] Installing rpm-0:4.20.0-1.fc4 100% | 152.6 MiB/s |   3.4 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[144/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[145/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  62.9 MiB/s | 193.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.0 100% | 279.4 MiB/s |   1.4 MiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 353.2 MiB/s |  17.0 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% | 102.2 MiB/s | 313.9 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB |  00m00s
[156/156] Installing info-0:7.1.1-2.fc4 100% | 280.6 KiB/s | 614.0 KiB |  00m02s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.4.3-1.fc42.aarch64
alternatives-1.30-1.fc41.aarch64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.aarch64
authselect-1.5.0-8.fc42.aarch64
authselect-libs-1.5.0-8.fc42.aarch64
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.aarch64
binutils-2.43.50-9.fc42.aarch64
build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch
bzip2-1.0.8-19.fc41.aarch64
bzip2-libs-1.0.8-19.fc41.aarch64
ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch
coreutils-9.5-11.fc42.aarch64
coreutils-common-9.5-11.fc42.aarch64
cpio-2.15-2.fc41.aarch64
cracklib-2.9.11-6.fc41.aarch64
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-1.fc42.aarch64
cyrus-sasl-lib-2.1.28-27.fc41.aarch64
debugedit-5.1-2.fc42.aarch64
diffutils-3.10-8.fc41.aarch64
dwz-0.15-8.fc42.aarch64
ed-1.20.2-2.fc41.aarch64
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.aarch64
elfutils-debuginfod-client-0.192-7.fc42.aarch64
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.aarch64
elfutils-libs-0.192-7.fc42.aarch64
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.11.noarch
fedora-release-common-42-0.11.noarch
fedora-release-identity-basic-42-0.11.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.aarch64
file-libs-5.45-8.fc42.aarch64
filesystem-3.18-29.fc42.aarch64
findutils-4.10.0-4.fc41.aarch64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.aarch64
gdb-minimal-15.2-4.fc42.aarch64
gdbm-1.23-7.fc41.aarch64
gdbm-libs-1.23-7.fc41.aarch64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-21.fc42.aarch64
glibc-common-2.40.9000-21.fc42.aarch64
glibc-gconv-extra-2.40.9000-21.fc42.aarch64
glibc-minimal-langpack-2.40.9000-21.fc42.aarch64
gmp-6.3.0-2.fc41.aarch64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.aarch64
gzip-1.13-2.fc41.aarch64
info-7.1.1-2.fc42.aarch64
jansson-2.14-1.fc42.aarch64
json-c-0.18-1.fc42.aarch64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.aarch64
krb5-libs-1.21.3-3.fc42.aarch64
libacl-2.3.2-2.fc41.aarch64
libarchive-3.7.7-1.fc42.aarch64
libattr-2.5.2-4.fc41.aarch64
libblkid-2.40.2-8.fc42.aarch64
libbrotli-1.1.0-5.fc41.aarch64
libcap-2.71-1.fc42.aarch64
libcap-ng-0.8.5-3.fc41.aarch64
libcom_err-1.47.1-6.fc42.aarch64
libcurl-8.11.1-1.fc42.aarch64
libeconf-0.7.5-1.fc42.aarch64
libevent-2.1.12-14.fc41.aarch64
libfdisk-2.40.2-8.fc42.aarch64
libffi-3.4.6-3.fc42.aarch64
libgcc-14.2.1-6.fc42.aarch64
libgomp-14.2.1-6.fc42.aarch64
libidn2-2.3.7-2.fc41.aarch64
libmount-2.40.2-8.fc42.aarch64
libnghttp2-1.64.0-1.fc42.aarch64
libnsl2-2.0.1-2.fc41.aarch64
libpkgconf-2.3.0-1.fc42.aarch64
libpsl-0.21.5-4.fc41.aarch64
libpwquality-1.4.5-11.fc41.aarch64
libselinux-3.8-0.rc1.2.fc42.aarch64
libsemanage-3.8-0.rc1.1.fc42.aarch64
libsepol-3.8-0.rc1.1.fc42.aarch64
libsmartcols-2.40.2-8.fc42.aarch64
libssh-0.11.1-1.fc42.aarch64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-6.fc42.aarch64
libtasn1-4.19.0-9.fc41.aarch64
libtirpc-1.3.6-1.fc42.aarch64
libtool-ltdl-2.5.4-1.fc42.aarch64
libunistring-1.1-8.fc41.aarch64
libuuid-2.40.2-8.fc42.aarch64
libverto-0.3.2-9.fc41.aarch64
libxcrypt-4.4.36-11.fc42.aarch64
libxml2-2.12.8-2.fc41.aarch64
libzstd-1.5.6-2.fc41.aarch64
lua-libs-5.4.7-1.fc42.aarch64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.aarch64
mpfr-4.2.1-5.fc41.aarch64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.aarch64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.aarch64
openssl-libs-3.2.2-8.fc42.aarch64
p11-kit-0.25.5-4.fc42.aarch64
p11-kit-trust-0.25.5-4.fc42.aarch64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.aarch64
pam-libs-1.7.0-3.fc42.aarch64
patch-2.7.6-25.fc41.aarch64
pcre2-10.44-1.fc41.1.aarch64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.aarch64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.aarch64
popt-1.19-7.fc41.aarch64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.aarch64
redhat-rpm-config-296-1.fc42.noarch
rpm-4.20.0-1.fc42.aarch64
rpm-build-4.20.0-1.fc42.aarch64
rpm-build-libs-4.20.0-1.fc42.aarch64
rpm-libs-4.20.0-1.fc42.aarch64
rpm-sequoia-1.7.0-3.fc42.aarch64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.aarch64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.17.0~rc1-1.fc42.aarch64
sqlite-libs-3.47.2-1.fc42.aarch64
systemd-libs-257-1.fc42.aarch64
tar-1.35-4.fc41.aarch64
unzip-6.0-65.fc42.aarch64
util-linux-2.40.2-8.fc42.aarch64
util-linux-core-2.40.2-8.fc42.aarch64
which-2.21-42.fc41.aarch64
xxhash-libs-0.8.2-4.fc42.aarch64
xz-5.6.3-2.fc42.aarch64
xz-libs-5.6.3-2.fc42.aarch64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.aarch64
zlib-ng-compat-2.2.2-1.fc42.aarch64
zstd-1.5.6-2.fc41.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1733961600
Wrote: /builddir/build/SRPMS/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1734008571.188433/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_bhqdmre/bout++/bout++.spec) Config(child) 0 minutes 19 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734008571.188433/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734008571.188433/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734008571.188433/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.aarch64
  rpm-sequoia-1.7.0-3.fc42.aarch64
  dnf5-5.2.8.1-2.fc42.aarch64
  dnf5-plugins-5.2.8.1-2.fc42.aarch64
Finish: chroot init
Start: build phase for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Start: build setup for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1733961600
Wrote: /builddir/build/SRPMS/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% | 481.2 KiB/s |  14.0 KiB |  00m00s
 Additional repo copr_sagitter_ForTesti 100% | 140.5 KiB/s |   1.8 KiB |  00m00s
 Copr repository                        100% | 108.7 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                               Arch    Version                           Repository                    Size
Installing:
 chrpath                              aarch64 0.16-24.fc41                      fedora                   230.5 KiB
 cmake                                aarch64 3.31.2-1.fc42                     fedora                    28.8 MiB
 doxygen                              aarch64 2:1.12.0-3.fc42                   fedora                    19.7 MiB
 environment-modules                  aarch64 5.5.0-1.fc42                      fedora                     1.8 MiB
 fftw-devel                           aarch64 3.3.10-13.fc41                    fedora                   283.0 KiB
 flexiblas-devel                      aarch64 3.4.4-3.fc41                      fedora                     5.1 MiB
 fmt-devel                            aarch64 11.0.2-2.fc42                     fedora                   575.3 KiB
 gcc-c++                              aarch64 14.2.1-6.fc42                     fedora                    36.8 MiB
 gdb                                  aarch64 15.2-4.fc42                       fedora                   446.4 KiB
 gettext-devel                        aarch64 0.22.5-6.fc41                     fedora                     1.1 MiB
 hdf5-devel                           aarch64 1.14.5-1.fc42                     fedora                     3.2 MiB
 hdf5-mpich-devel                     aarch64 1.14.5-1.fc42                     fedora                     3.1 MiB
 hdf5-openmpi-devel                   aarch64 1.14.5-1.fc42                     fedora                     3.1 MiB
 m4                                   aarch64 1.4.19-10.fc41                    fedora                   668.7 KiB
 make                                 aarch64 1:4.4.1-9.fc42                    fedora                     1.8 MiB
 mpark-variant-devel                  aarch64 1.4.0-13.fc41                     fedora                   117.1 KiB
 mpich-devel                          aarch64 4.2.2-1.fc42                      fedora                     2.0 MiB
 netcdf-cxx4-devel                    aarch64 4.3.1-13.fc41                     fedora                   459.0 KiB
 netcdf-devel                         aarch64 4.9.2-7.fc42                      fedora                   368.6 KiB
 openmpi-devel                        aarch64 5.0.6-1.fc42                      fedora                     3.3 MiB
 petsc-mpich-devel                    aarch64 3.22.2-1.fc42                     copr_sagitter_ForTesting  10.6 MiB
 petsc-openmpi-devel                  aarch64 3.22.2-1.fc42                     copr_sagitter_ForTesting  11.2 MiB
 python3                              aarch64 3.13.1-2.fc42                     fedora                    82.5 KiB
 python3-boutdata                     noarch  0.2.1-7.fc41                      fedora                   545.5 KiB
 python3-boututils                    noarch  0.2.1-6.fc41                      fedora                   435.6 KiB
 python3-cython                       aarch64 3.0.11-1.fc41                     fedora                    19.1 MiB
 python3-devel                        aarch64 3.13.1-2.fc42                     fedora                     1.8 MiB
 python3-jinja2                       noarch  3.1.4-5.fc41                      fedora                     2.9 MiB
 python3-netcdf4                      aarch64 1.7.2-1.fc42                      fedora                     2.2 MiB
 python3-numpy                        aarch64 1:1.26.4-8.fc41                   fedora                    41.2 MiB
 python3-scipy                        aarch64 1.14.1-1.fc42                     fedora                    66.6 MiB
 python3-sphinx                       noarch  1:7.3.7-2.fc41                    fedora                    10.8 MiB
 python3-tables                       aarch64 3.10.1-3.fc42                     fedora                    10.2 MiB
 python3-zoidberg                     noarch  0.1.1-8.fc42                      fedora                   508.6 KiB
 sundials-debuginfo                   aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.6 MiB
 sundials-debugsource                 aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting  22.1 MiB
 sundials-devel                       aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.9 MiB
 sundials-mpich-debuginfo             aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.5 MiB
 sundials-mpich-devel                 aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   7.2 MiB
 sundials-openmpi-debuginfo           aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.5 MiB
 sundials-openmpi-devel               aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   7.3 MiB
 zlib-ng-compat-devel                 aarch64 2.2.2-1.fc42                      fedora                   106.8 KiB
Installing dependencies:
 MUMPS-common                         noarch  5.7.3-1.fc42                      copr_sagitter_ForTesting 988.4 KiB
 MUMPS-mpich                          aarch64 5.7.3-1.fc42                      copr_sagitter_ForTesting   8.1 MiB
 MUMPS-openmpi                        aarch64 5.7.3-1.fc42                      copr_sagitter_ForTesting   8.1 MiB
 SuperLUMT-common                     noarch  4.0.1-3.fc41                      fedora                   679.2 KiB
 SuperLUMT64-double                   aarch64 4.0.1-3.fc41                      fedora                   261.3 KiB
 abattis-cantarell-vf-fonts           noarch  0.301-13.fc41                     fedora                   192.7 KiB
 adobe-mappings-cmap                  noarch  20231115-1.fc42                   fedora                    15.2 MiB
 adobe-mappings-cmap-deprecated       noarch  20231115-1.fc42                   fedora                   582.1 KiB
 adobe-mappings-pdf                   noarch  20190401-8.fc41                   fedora                     4.4 MiB
 annobin-docs                         noarch  12.79-1.fc42                      fedora                    98.6 KiB
 annobin-plugin-gcc                   aarch64 12.79-1.fc42                      fedora                   997.2 KiB
 avahi-libs                           aarch64 0.8-30.fc42                       fedora                   614.5 KiB
 blosc                                aarch64 1.21.6-1.fc42                     fedora                   258.0 KiB
 blosc2                               aarch64 2.15.1-1.fc42                     fedora                   640.1 KiB
 boost-regex                          aarch64 1.83.0-9.fc42                     fedora                   259.7 KiB
 brotli                               aarch64 1.1.0-5.fc41                      fedora                   195.8 KiB
 brotli-devel                         aarch64 1.1.0-5.fc41                      fedora                    65.6 KiB
 cairo                                aarch64 1.18.2-2.fc42                     fedora                     1.8 MiB
 cairo-gobject                        aarch64 1.18.2-2.fc42                     fedora                    66.1 KiB
 cmake-data                           noarch  3.31.2-1.fc42                     fedora                     8.5 MiB
 cmake-filesystem                     aarch64 3.31.2-1.fc42                     fedora                     0.0   B
 cmake-rpm-macros                     noarch  3.31.2-1.fc42                     fedora                     7.5 KiB
 cpp                                  aarch64 14.2.1-6.fc42                     fedora                    33.7 MiB
 ctags                                aarch64 6.1.0-1.fc42                      fedora                     2.3 MiB
 cups-filesystem                      noarch  1:2.4.11-8.fc42                   fedora                     0.0   B
 cups-libs                            aarch64 1:2.4.11-8.fc42                   fedora                   721.8 KiB
 dbus                                 aarch64 1:1.14.10-4.fc41                  fedora                     0.0   B
 dbus-broker                          aarch64 36-4.fc41                         fedora                   614.3 KiB
 dbus-common                          noarch  1:1.14.10-4.fc41                  fedora                    11.2 KiB
 dbus-libs                            aarch64 1:1.14.10-4.fc41                  fedora                   489.1 KiB
 default-fonts-core-sans              noarch  4.2-2.fc42                        fedora                    11.9 KiB
 dejavu-sans-fonts                    noarch  2.37-24.fc41                      fedora                     5.5 MiB
 emacs-filesystem                     noarch  1:30.0-3.fc41                     fedora                     0.0   B
 expat                                aarch64 2.6.4-1.fc42                      fedora                   349.3 KiB
 fftw                                 aarch64 3.3.10-13.fc41                    fedora                   605.8 KiB
 fftw-libs                            aarch64 3.3.10-13.fc41                    fedora                     0.0   B
 fftw-libs-double                     aarch64 3.3.10-13.fc41                    fedora                     2.3 MiB
 fftw-libs-long                       aarch64 3.3.10-13.fc41                    fedora                     2.7 MiB
 fftw-libs-single                     aarch64 3.3.10-13.fc41                    fedora                     2.4 MiB
 flexiblas                            aarch64 3.4.4-3.fc41                      fedora                    48.5 KiB
 flexiblas-netlib                     aarch64 3.4.4-3.fc41                      fedora                     9.8 MiB
 flexiblas-netlib64                   aarch64 3.4.4-3.fc41                      fedora                     9.7 MiB
 flexiblas-openblas-openmp            aarch64 3.4.4-3.fc41                      fedora                   195.4 KiB
 flexiblas-openblas-openmp64          aarch64 3.4.4-3.fc41                      fedora                   195.5 KiB
 fmt                                  aarch64 11.0.2-2.fc42                     fedora                   375.7 KiB
 fontconfig                           aarch64 2.15.0-8.fc41                     fedora                     2.4 MiB
 fonts-filesystem                     noarch  1:2.0.5-17.fc41                   fedora                     0.0   B
 freetype                             aarch64 2.13.3-1.fc42                     fedora                   943.0 KiB
 fribidi                              aarch64 1.0.16-1.fc42                     fedora                   502.6 KiB
 gcc                                  aarch64 14.2.1-6.fc42                     fedora                    96.6 MiB
 gcc-gfortran                         aarch64 14.2.1-6.fc42                     fedora                    35.7 MiB
 gcc-plugin-annobin                   aarch64 14.2.1-6.fc42                     fedora                    73.5 KiB
 gd                                   aarch64 2.3.3-17.fc41                     fedora                   515.7 KiB
 gdb-headless                         aarch64 15.2-4.fc42                       fedora                    14.8 MiB
 gdk-pixbuf2                          aarch64 2.42.12-6.fc41                    fedora                     2.9 MiB
 gettext                              aarch64 0.22.5-6.fc41                     fedora                     8.2 MiB
 gettext-common-devel                 noarch  0.22.5-6.fc41                     fedora                   586.5 KiB
 gettext-envsubst                     aarch64 0.22.5-6.fc41                     fedora                   234.9 KiB
 gettext-libs                         aarch64 0.22.5-6.fc41                     fedora                     2.0 MiB
 gettext-runtime                      aarch64 0.22.5-6.fc41                     fedora                   793.2 KiB
 glib2                                aarch64 2.83.0-3.fc42                     fedora                    15.3 MiB
 glibc-devel                          aarch64 2.40.9000-21.fc42                 fedora                     2.2 MiB
 gnupg2                               aarch64 2.4.5-4.fc42                      fedora                    10.1 MiB
 gnutls                               aarch64 3.8.8-1.fc42                      fedora                     3.4 MiB
 google-droid-sans-fonts              noarch  20200215-21.fc41                  fedora                     6.3 MiB
 google-noto-fonts-common             noarch  20240901-1.fc42                   fedora                    17.5 KiB
 google-noto-sans-vf-fonts            noarch  20240901-1.fc42                   fedora                     1.2 MiB
 gpgme                                aarch64 1.24.0-1.fc42                     fedora                   690.0 KiB
 gpgmepp                              aarch64 1.24.0-1.fc42                     fedora                   458.0 KiB
 graphite2                            aarch64 1.3.14-16.fc41                    fedora                   495.9 KiB
 graphviz                             aarch64 12.2.1-1.fc42                     fedora                    22.0 MiB
 graphviz-libs                        aarch64 12.2.1-1.fc42                     fedora                     1.3 MiB
 groff-base                           aarch64 1.23.0-7.fc41                     fedora                     5.2 MiB
 gts                                  aarch64 0.7.6-49.20121130.fc41            fedora                     2.4 MiB
 harfbuzz                             aarch64 10.1.0-2.fc42                     fedora                     2.5 MiB
 hdf-libs                             aarch64 4.3.0-1.fc42                      fedora                   851.5 KiB
 hdf5                                 aarch64 1.14.5-1.fc42                     fedora                     8.1 MiB
 hdf5-mpich                           aarch64 1.14.5-1.fc42                     fedora                     7.9 MiB
 hdf5-openmpi                         aarch64 1.14.5-1.fc42                     fedora                     7.9 MiB
 hwloc-libs                           aarch64 2.11.2-1.fc42                     fedora                     2.9 MiB
 hypre-mpich                          aarch64 2.32.0-1.fc42                     copr_sagitter_ForTesting   4.2 MiB
 hypre-openmpi                        aarch64 2.32.0-1.fc42                     copr_sagitter_ForTesting   4.2 MiB
 jbig2dec-libs                        aarch64 0.20-5.fc41                       fedora                   301.1 KiB
 jbigkit-libs                         aarch64 2.1-30.fc41                       fedora                   437.7 KiB
 jsoncpp                              aarch64 1.9.5-8.fc41                      fedora                   335.7 KiB
 kernel-headers                       aarch64 6.13.0-0.rc1.e70140ba0d2b.14.fc42 fedora                     6.4 MiB
 keyutils-libs-devel                  aarch64 1.6.3-4.fc41                      fedora                    48.2 KiB
 krb5-devel                           aarch64 1.21.3-3.fc42                     fedora                   705.9 KiB
 lasi                                 aarch64 1.1.3-14.fc41                     fedora                   258.5 KiB
 lcms2                                aarch64 2.16-4.fc41                       fedora                   484.9 KiB
 less                                 aarch64 668-1.fc42                        fedora                   870.3 KiB
 libICE                               aarch64 1.1.1-4.fc41                      fedora                   273.1 KiB
 libSM                                aarch64 1.2.4-4.fc41                      fedora                   253.4 KiB
 libX11                               aarch64 1.8.10-2.fc42                     fedora                     1.3 MiB
 libX11-common                        noarch  1.8.10-2.fc42                     fedora                     1.1 MiB
 libXau                               aarch64 1.0.11-7.fc41                     fedora                   242.9 KiB
 libXext                              aarch64 1.3.6-2.fc41                      fedora                   210.0 KiB
 libXft                               aarch64 2.3.8-7.fc41                      fedora                   256.5 KiB
 libXpm                               aarch64 3.5.17-4.fc41                     fedora                   264.5 KiB
 libXrender                           aarch64 0.9.11-7.fc41                     fedora                   198.2 KiB
 libXt                                aarch64 1.3.1-1.fc42                      fedora                   480.5 KiB
 libaec                               aarch64 1.1.3-1.fc42                      fedora                   410.2 KiB
 libaec-devel                         aarch64 1.1.3-1.fc42                      fedora                    12.5 KiB
 libaom                               aarch64 3.9.0-3.fc41                      fedora                     3.7 MiB
 libasan                              aarch64 14.2.1-6.fc42                     fedora                     1.5 MiB
 libassuan                            aarch64 2.5.7-2.fc41                      fedora                   279.8 KiB
 libatomic                            aarch64 14.2.1-6.fc42                     fedora                    69.0 KiB
 libavif                              aarch64 1.0.4-7.fc41                      fedora                   279.9 KiB
 libb2                                aarch64 0.98.1-12.fc41                    fedora                   202.2 KiB
 libbabeltrace                        aarch64 1.5.11-9.fc41                     fedora                     1.4 MiB
 libcbor                              aarch64 0.11.0-2.fc41                     fedora                   202.0 KiB
 libcom_err-devel                     aarch64 1.47.1-6.fc42                     fedora                    16.7 KiB
 libcurl-devel                        aarch64 8.11.1-1.fc42                     fedora                     1.3 MiB
 libdatrie                            aarch64 0.2.13-10.fc41                    fedora                   222.0 KiB
 libdav1d                             aarch64 1.5.0-1.fc42                      fedora                   921.0 KiB
 libedit                              aarch64 3.1-53.20240808cvs.fc41           fedora                   344.2 KiB
 libfabric                            aarch64 1.22.0-1.fc41                     fedora                     2.1 MiB
 libfido2                             aarch64 1.15.0-2.fc41                     fedora                   342.4 KiB
 libgcrypt                            aarch64 1.11.0-4.fc42                     fedora                     1.1 MiB
 libgfortran                          aarch64 14.2.1-6.fc42                     fedora                     1.5 MiB
 libgpg-error                         aarch64 1.51-1.fc42                       fedora                   955.0 KiB
 libgs                                aarch64 10.04.0-1.fc42                    fedora                    23.2 MiB
 libibverbs                           aarch64 54.0-3.fc42                       fedora                     1.7 MiB
 libicu                               aarch64 76.1-1.fc42                       fedora                    36.5 MiB
 libidn2-devel                        aarch64 2.3.7-2.fc41                      fedora                   252.1 KiB
 libijs                               aarch64 0.35-23.fc41                      fedora                   229.7 KiB
 libimagequant                        aarch64 4.0.3-5.fc41                      fedora                   667.1 KiB
 libjpeg-turbo                        aarch64 3.0.4-1.fc42                      fedora                   796.8 KiB
 libkadm5                             aarch64 1.21.3-3.fc42                     fedora                   267.6 KiB
 libksba                              aarch64 1.6.7-2.fc41                      fedora                   526.5 KiB
 liblerc                              aarch64 4.0.0-7.fc41                      fedora                   610.5 KiB
 libmpc                               aarch64 1.3.1-6.fc41                      fedora                   280.8 KiB
 libnghttp2-devel                     aarch64 1.64.0-1.fc42                     fedora                   295.4 KiB
 libnl3                               aarch64 3.11.0-1.fc42                     fedora                     1.3 MiB
 libpaper                             aarch64 1:2.1.1-7.fc41                    fedora                   225.0 KiB
 libpipeline                          aarch64 1.5.8-1.fc42                      fedora                   273.1 KiB
 libpng                               aarch64 2:1.6.44-1.fc42                   fedora                   333.9 KiB
 libpsl-devel                         aarch64 0.21.5-4.fc41                     fedora                   110.3 KiB
 libqhull_r                           aarch64 1:8.0.2-5.fc41                    fedora                   583.5 KiB
 libraqm                              aarch64 0.10.1-1.fc42                     fedora                   196.8 KiB
 librdmacm                            aarch64 54.0-3.fc42                       fedora                   210.8 KiB
 librsvg2                             aarch64 2.59.2-1.fc42                     fedora                     4.3 MiB
 libseccomp                           aarch64 2.5.5-2.fc41                      fedora                   241.4 KiB
 libselinux-devel                     aarch64 3.8-0.rc1.2.fc42                  fedora                   126.6 KiB
 libsepol-devel                       aarch64 3.8-0.rc1.1.fc42                  fedora                   120.8 KiB
 libssh-devel                         aarch64 0.11.1-1.fc42                     fedora                   177.8 KiB
 libstdc++-devel                      aarch64 14.2.1-6.fc42                     fedora                    15.1 MiB
 libtextstyle                         aarch64 0.22.5-6.fc41                     fedora                   263.3 KiB
 libthai                              aarch64 0.1.29-9.fc41                     fedora                   935.5 KiB
 libtiff                              aarch64 4.7.0-2.fc42                      fedora                   658.8 KiB
 libubsan                             aarch64 14.2.1-6.fc42                     fedora                   475.2 KiB
 libuv                                aarch64 1:1.49.2-1.fc42                   fedora                   664.8 KiB
 libverto-devel                       aarch64 0.3.2-9.fc41                      fedora                    25.7 KiB
 libwebp                              aarch64 1.4.0-4.fc41                      fedora                     1.2 MiB
 libxcb                               aarch64 1.17.0-3.fc42                     fedora                     5.0 MiB
 libxcrypt-devel                      aarch64 4.4.36-11.fc42                    fedora                    30.5 KiB
 libyaml                              aarch64 0.2.5-15.fc41                     fedora                   262.6 KiB
 logrotate                            aarch64 3.22.0-2.fc41                     fedora                   253.0 KiB
 lzo                                  aarch64 2.10-13.fc41                      fedora                   290.9 KiB
 man-db                               aarch64 2.13.0-1.fc42                     fedora                     4.6 MiB
 metis                                aarch64 5.1.0.3-6.fc41                    fedora                     2.0 MiB
 mpdecimal                            aarch64 2.5.1-16.fc41                     fedora                   328.9 KiB
 mpich                                aarch64 4.2.2-1.fc42                      fedora                     7.9 MiB
 munge                                aarch64 0.5.16-3.fc41                     fedora                     1.1 MiB
 munge-libs                           aarch64 0.5.16-3.fc41                     fedora                   196.2 KiB
 ncurses                              aarch64 6.5-2.20240629.fc41               fedora                     1.7 MiB
 netcdf                               aarch64 4.9.2-7.fc42                      fedora                    35.8 MiB
 netcdf-cxx4                          aarch64 4.3.1-13.fc41                     fedora                   392.1 KiB
 netpbm                               aarch64 11.02.00-7.fc41                   fedora                   629.0 KiB
 nettle                               aarch64 3.10-3.fc41                       fedora                   956.7 KiB
 npth                                 aarch64 1.8-1.fc42                        fedora                    93.5 KiB
 nspr                                 aarch64 4.36.0-2.fc42                     fedora                   409.8 KiB
 nss                                  aarch64 3.107.0-1.fc42                    fedora                     1.9 MiB
 nss-softokn                          aarch64 3.107.0-1.fc42                    fedora                     2.1 MiB
 nss-softokn-freebl                   aarch64 3.107.0-1.fc42                    fedora                   726.7 KiB
 nss-sysinit                          aarch64 3.107.0-1.fc42                    fedora                    69.0 KiB
 nss-util                             aarch64 3.107.0-1.fc42                    fedora                   212.2 KiB
 openblas                             aarch64 0.3.28-2.fc42                     fedora                   106.6 KiB
 openblas-openmp                      aarch64 0.3.28-2.fc42                     fedora                    20.6 MiB
 openblas-openmp64                    aarch64 0.3.28-2.fc42                     fedora                    20.4 MiB
 openblas-serial                      aarch64 0.3.28-2.fc42                     fedora                    19.6 MiB
 openjpeg                             aarch64 2.5.2-4.fc42                      fedora                   537.7 KiB
 openmpi                              aarch64 5.0.6-1.fc42                      fedora                     7.2 MiB
 openssh                              aarch64 9.9p1-5.fc42                      fedora                     1.4 MiB
 openssh-clients                      aarch64 9.9p1-5.fc42                      fedora                     2.9 MiB
 openssl-devel                        aarch64 1:3.2.2-8.fc42                    fedora                     4.3 MiB
 orangefs                             aarch64 2.9.8-12.fc41                     fedora                     8.6 MiB
 pango                                aarch64 1.54.0-2.fc41                     fedora                     1.9 MiB
 pcre2-devel                          aarch64 10.44-1.fc41.1                    fedora                     2.0 MiB
 pcre2-utf16                          aarch64 10.44-1.fc41.1                    fedora                   645.9 KiB
 pcre2-utf32                          aarch64 10.44-1.fc41.1                    fedora                   645.8 KiB
 perl-AutoLoader                      noarch  5.74-512.fc42                     fedora                    20.5 KiB
 perl-B                               aarch64 1.89-512.fc42                     fedora                   606.1 KiB
 perl-Carp                            noarch  1.54-511.fc41                     fedora                    46.6 KiB
 perl-Class-Struct                    noarch  0.68-512.fc42                     fedora                    25.4 KiB
 perl-Data-Dumper                     aarch64 2.189-512.fc41                    fedora                   263.8 KiB
 perl-Digest                          noarch  1.20-511.fc41                     fedora                    35.3 KiB
 perl-Digest-MD5                      aarch64 2.59-5.fc41                       fedora                   231.9 KiB
 perl-DynaLoader                      aarch64 1.56-512.fc42                     fedora                    32.1 KiB
 perl-Encode                          aarch64 4:3.21-511.fc41                   fedora                     5.9 MiB
 perl-Errno                           aarch64 1.38-512.fc42                     fedora                     8.4 KiB
 perl-Exporter                        noarch  5.78-511.fc41                     fedora                    54.3 KiB
 perl-Fcntl                           aarch64 1.18-512.fc42                     fedora                   221.1 KiB
 perl-File-Basename                   noarch  2.86-512.fc42                     fedora                    14.0 KiB
 perl-File-Path                       noarch  2.18-511.fc41                     fedora                    63.5 KiB
 perl-File-Temp                       noarch  1:0.231.100-511.fc41              fedora                   162.3 KiB
 perl-File-stat                       noarch  1.14-512.fc42                     fedora                    12.5 KiB
 perl-FileHandle                      noarch  2.05-512.fc42                     fedora                     9.3 KiB
 perl-Getopt-Long                     noarch  1:2.58-2.fc41                     fedora                   144.5 KiB
 perl-Getopt-Std                      noarch  1.14-512.fc42                     fedora                    11.2 KiB
 perl-HTTP-Tiny                       noarch  0.090-1.fc42                      fedora                   154.4 KiB
 perl-IO                              aarch64 1.55-512.fc42                     fedora                   319.2 KiB
 perl-IO-Socket-IP                    noarch  0.43-1.fc42                       fedora                   100.3 KiB
 perl-IO-Socket-SSL                   noarch  2.089-1.fc42                      fedora                   703.3 KiB
 perl-IPC-Open3                       noarch  1.22-512.fc42                     fedora                    22.5 KiB
 perl-MIME-Base32                     noarch  1.303-21.fc41                     fedora                    30.7 KiB
 perl-MIME-Base64                     aarch64 3.16-511.fc41                     fedora                   222.2 KiB
 perl-Net-SSLeay                      aarch64 1.94-7.fc41                       fedora                     1.4 MiB
 perl-POSIX                           aarch64 2.20-512.fc42                     fedora                   327.3 KiB
 perl-PathTools                       aarch64 3.91-511.fc41                     fedora                   352.1 KiB
 perl-Pod-Escapes                     noarch  1:1.07-511.fc41                   fedora                    24.9 KiB
 perl-Pod-Perldoc                     noarch  3.28.01-512.fc41                  fedora                   163.7 KiB
 perl-Pod-Simple                      noarch  1:3.45-511.fc41                   fedora                   560.9 KiB
 perl-Pod-Usage                       noarch  4:2.03-511.fc41                   fedora                    84.8 KiB
 perl-Scalar-List-Utils               aarch64 5:1.68-1.fc42                     fedora                   281.0 KiB
 perl-SelectSaver                     noarch  1.02-512.fc42                     fedora                     2.2 KiB
 perl-Socket                          aarch64 4:2.038-511.fc41                  fedora                   272.1 KiB
 perl-Storable                        aarch64 1:3.32-511.fc41                   fedora                   372.5 KiB
 perl-Symbol                          noarch  1.09-512.fc42                     fedora                     6.8 KiB
 perl-Term-ANSIColor                  noarch  5.01-512.fc41                     fedora                    97.5 KiB
 perl-Term-Cap                        noarch  1.18-511.fc41                     fedora                    29.3 KiB
 perl-Text-ParseWords                 noarch  3.31-511.fc41                     fedora                    13.6 KiB
 perl-Text-Tabs+Wrap                  noarch  2024.001-511.fc41                 fedora                    22.6 KiB
 perl-Time-Local                      noarch  2:1.350-511.fc41                  fedora                    69.0 KiB
 perl-URI                             noarch  5.31-1.fc42                       fedora                   257.0 KiB
 perl-base                            noarch  2.27-512.fc42                     fedora                    12.5 KiB
 perl-constant                        noarch  1.33-512.fc41                     fedora                    26.2 KiB
 perl-if                              noarch  0.61.000-512.fc42                 fedora                     5.8 KiB
 perl-interpreter                     aarch64 4:5.40.0-512.fc42                 fedora                   302.3 KiB
 perl-libnet                          noarch  3.15-512.fc41                     fedora                   289.4 KiB
 perl-libs                            aarch64 4:5.40.0-512.fc42                 fedora                    10.9 MiB
 perl-locale                          noarch  1.12-512.fc42                     fedora                     6.5 KiB
 perl-mro                             aarch64 1.29-512.fc42                     fedora                   209.7 KiB
 perl-overload                        noarch  1.37-512.fc42                     fedora                    71.5 KiB
 perl-overloading                     noarch  0.02-512.fc42                     fedora                     4.8 KiB
 perl-parent                          noarch  1:0.243-1.fc42                    fedora                    10.2 KiB
 perl-podlators                       noarch  1:6.0.2-2.fc41                    fedora                   317.5 KiB
 perl-vars                            noarch  1.05-512.fc42                     fedora                     3.9 KiB
 petsc-mpich                          aarch64 3.22.2-1.fc42                     copr_sagitter_ForTesting  23.2 MiB
 petsc-openmpi                        aarch64 3.22.2-1.fc42                     copr_sagitter_ForTesting  23.2 MiB
 pixman                               aarch64 0.44.2-1.fc42                     fedora                   644.4 KiB
 pmix                                 aarch64 4.2.8-3.fc41                      fedora                     2.5 MiB
 poppler                              aarch64 24.08.0-1.fc42                    fedora                     3.5 MiB
 poppler-data                         noarch  0.4.11-8.fc41                     fedora                    12.3 MiB
 poppler-glib                         aarch64 24.08.0-1.fc42                    fedora                   665.8 KiB
 procps-ng                            aarch64 4.0.4-4.fc41                      fedora                     4.1 MiB
 prrte                                aarch64 3.0.6-1.fc42                      fedora                   991.0 KiB
 prrte-libs                           aarch64 3.0.6-1.fc42                      fedora                     1.9 MiB
 ptscotch-mpich                       aarch64 7.0.6-1.fc42                      fedora                     1.5 MiB
 ptscotch-mpich-devel                 aarch64 7.0.6-1.fc42                      fedora                   100.2 KiB
 ptscotch-mpich-devel-parmetis        aarch64 7.0.6-1.fc42                      fedora                    37.9 KiB
 ptscotch-openmpi                     aarch64 7.0.6-1.fc42                      fedora                     1.5 MiB
 publicsuffix-list                    noarch  20240107-4.fc41                   fedora                   318.0 KiB
 pyproject-rpm-macros                 noarch  1.16.3-1.fc42                     fedora                   113.7 KiB
 python-pip-wheel                     noarch  24.3.1-1.fc42                     fedora                     1.2 MiB
 python-rpm-macros                    noarch  3.13-3.fc41                       fedora                    22.1 KiB
 python3-babel                        noarch  2.16.0-1.fc42                     fedora                    28.3 MiB
 python3-blosc2                       aarch64 2.7.1-1.fc42                      fedora                     1.0 MiB
 python3-cairo                        aarch64 1.25.1-5.fc41                     fedora                   584.5 KiB
 python3-certifi                      noarch  2024.08.30-1.fc42                 fedora                     6.8 KiB
 python3-cftime                       aarch64 1.6.4-1.fc41                      fedora                   624.4 KiB
 python3-charset-normalizer           noarch  3.4.0-1.fc42                      fedora                   319.9 KiB
 python3-contourpy                    aarch64 1.3.1-1.fc42                      fedora                   826.9 KiB
 python3-cpuinfo                      noarch  9.0.0-10.fc42                     fedora                   307.8 KiB
 python3-cycler                       noarch  0.11.0-13.fc41                    fedora                    37.6 KiB
 python3-dateutil                     noarch  1:2.8.2-16.fc41                   fedora                   879.2 KiB
 python3-docutils                     noarch  0.21.2-1.fc42                     fedora                     4.9 MiB
 python3-fonttools                    aarch64 4.55.2-1.fc42                     fedora                    17.9 MiB
 python3-idna                         noarch  3.10-1.fc42                       fedora                   628.0 KiB
 python3-imagesize                    noarch  1.4.1-9.fc41                      fedora                    35.3 KiB
 python3-kiwisolver                   aarch64 1.4.7-1.fc42                      fedora                   289.4 KiB
 python3-libs                         aarch64 3.13.1-2.fc42                     fedora                    41.7 MiB
 python3-markupsafe                   aarch64 3.0.2-1.fc42                      fedora                   112.1 KiB
 python3-matplotlib                   aarch64 3.9.3-1.fc42                      fedora                    21.0 MiB
 python3-matplotlib-data              noarch  3.9.3-1.fc42                      fedora                   726.7 KiB
 python3-matplotlib-data-fonts        noarch  3.9.3-1.fc42                      fedora                     7.9 MiB
 python3-matplotlib-tk                aarch64 3.9.3-1.fc42                      fedora                   296.4 KiB
 python3-mpmath                       noarch  1.3.0-10.fc41                     fedora                     5.2 MiB
 python3-msgpack                      aarch64 1.1.0-1.fc42                      fedora                   414.0 KiB
 python3-natsort                      noarch  8.4.0-2.fc41                      fedora                   252.8 KiB
 python3-ndindex                      aarch64 1.7-13.fc41                       fedora                     4.4 MiB
 python3-numexpr                      aarch64 2.8.5-7.fc41                      fedora                   678.8 KiB
 python3-numpy-f2py                   aarch64 1:1.26.4-8.fc41                   fedora                     2.8 MiB
 python3-olefile                      noarch  0.47-5.fc41                       fedora                   340.4 KiB
 python3-packaging                    noarch  24.2-2.fc42                       fedora                   555.7 KiB
 python3-pillow                       aarch64 11.0.0-1.fc42                     fedora                     4.8 MiB
 python3-pillow-tk                    aarch64 11.0.0-1.fc42                     fedora                   249.0 KiB
 python3-platformdirs                 noarch  4.2.2-2.fc41                      fedora                   168.6 KiB
 python3-pooch                        noarch  1.8.2-3.fc41                      fedora                   625.5 KiB
 python3-pygments                     noarch  2.18.0-2.fc42                     fedora                    10.6 MiB
 python3-pyparsing                    noarch  3.1.2-7.fc41                      fedora                     1.0 MiB
 python3-requests                     noarch  2.32.3-3.fc41                     fedora                   485.9 KiB
 python3-rpm-generators               noarch  14-11.fc41                        fedora                    81.7 KiB
 python3-rpm-macros                   noarch  3.13-3.fc41                       fedora                     6.4 KiB
 python3-six                          noarch  1.16.0-23.fc41                    fedora                   118.3 KiB
 python3-snowballstemmer              noarch  2.2.0-13.fc41                     fedora                     1.7 MiB
 python3-sphinx-theme-alabaster       noarch  0.7.16-6.fc41                     fedora                    41.9 KiB
 python3-sympy                        aarch64 1.13.3-1.fc42                     fedora                    78.3 MiB
 python3-tkinter                      aarch64 3.13.1-2.fc42                     fedora                     1.9 MiB
 python3-typing-extensions            noarch  4.12.2-3.fc41                     fedora                   464.5 KiB
 python3-urllib3                      noarch  2.2.3-3.fc42                      fedora                     1.0 MiB
 rav1e-libs                           aarch64 0.7.1-4.fc42                      fedora                     2.1 MiB
 rhash                                aarch64 1.4.5-1.fc42                      fedora                   587.1 KiB
 rpm-mpi-hooks                        noarch  8-10.fc41                         fedora                     8.7 KiB
 rsvg-pixbuf-loader                   aarch64 2.59.2-1.fc42                     fedora                   336.6 KiB
 scalapack-common                     aarch64 2.2.0-10.fc41                     fedora                    26.8 KiB
 scalapack-mpich                      aarch64 2.2.0-10.fc41                     fedora                     4.5 MiB
 scalapack-openmpi                    aarch64 2.2.0-10.fc41                     fedora                     4.5 MiB
 shared-mime-info                     aarch64 2.3-6.fc41                        fedora                     5.3 MiB
 snappy                               aarch64 1.2.1-3.fc42                      fedora                   211.1 KiB
 source-highlight                     aarch64 3.1.9-23.fc41                     fedora                     3.5 MiB
 suitesparse                          aarch64 7.7.0-2.fc41                      fedora                   116.3 MiB
 suitesparse64                        aarch64 7.7.0-2.fc41                      fedora                   116.3 MiB
 sundials                             aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   5.6 MiB
 sundials-mpich                       aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.0 MiB
 sundials-openmpi                     aarch64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.0 MiB
 superlu_dist-mpich                   aarch64 1:8.2.0-5.fc42                    fedora                     1.5 MiB
 superlu_dist-mpich-devel             aarch64 1:8.2.0-5.fc42                    fedora                   621.1 KiB
 superlu_dist-openmpi                 aarch64 1:8.2.0-5.fc42                    fedora                     1.5 MiB
 superlu_dist-openmpi-devel           aarch64 1:8.2.0-5.fc42                    fedora                   622.4 KiB
 svt-av1-libs                         aarch64 2.1.0-2.fc41                      fedora                     4.2 MiB
 systemd                              aarch64 257-1.fc42                        fedora                    19.9 MiB
 systemd-pam                          aarch64 257-1.fc42                        fedora                     1.2 MiB
 systemd-rpm-macros                   noarch  257-1.fc42                        fedora                    10.7 KiB
 tcl                                  aarch64 1:8.6.15-6.fc42                   fedora                     4.3 MiB
 tcsh                                 aarch64 6.24.14-1.fc42                    fedora                     1.2 MiB
 tk                                   aarch64 1:8.6.15-1.fc42                   fedora                     3.9 MiB
 torque-libs                          aarch64 6.1.3-13.fc42                     fedora                   520.6 KiB
 tpm2-tss                             aarch64 4.1.3-3.fc41                      fedora                     3.6 MiB
 tzdata                               noarch  2024a-9.fc41                      fedora                     1.7 MiB
 ucx                                  aarch64 1.17.0-3.fc42                     fedora                     2.6 MiB
 urw-base35-bookman-fonts             noarch  20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-c059-fonts                noarch  20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-d050000l-fonts            noarch  20200910-23.fc41                  fedora                    84.3 KiB
 urw-base35-fonts                     noarch  20200910-23.fc41                  fedora                     5.3 KiB
 urw-base35-fonts-common              noarch  20200910-23.fc41                  fedora                    37.4 KiB
 urw-base35-gothic-fonts              noarch  20200910-23.fc41                  fedora                     1.2 MiB
 urw-base35-nimbus-mono-ps-fonts      noarch  20200910-23.fc41                  fedora                     1.0 MiB
 urw-base35-nimbus-roman-fonts        noarch  20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-nimbus-sans-fonts         noarch  20200910-23.fc41                  fedora                     2.4 MiB
 urw-base35-p052-fonts                noarch  20200910-23.fc41                  fedora                     1.5 MiB
 urw-base35-standard-symbols-ps-fonts noarch  20200910-23.fc41                  fedora                    64.9 KiB
 urw-base35-z003-fonts                noarch  20200910-23.fc41                  fedora                   390.8 KiB
 vim-filesystem                       noarch  2:9.1.906-1.fc42                  fedora                    40.0   B
 xapian-core-libs                     aarch64 1.4.26-1.fc42                     fedora                     2.1 MiB
 xml-common                           noarch  0.6.3-65.fc41                     fedora                    78.4 KiB
 yaksa                                aarch64 0.3-6.fc41                        fedora                    37.5 MiB
 zlib-ng                              aarch64 2.2.2-1.fc42                      fedora                   149.3 KiB

Transaction Summary:
 Installing:       400 packages

Total size of inbound packages is 428 MiB. Need to download 428 MiB.
After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B).
[  1/400] chrpath-0:0.16-24.fc41.aarch6 100% |   2.2 MiB/s |  29.9 KiB |  00m00s
[  2/400] environment-modules-0:5.5.0-1 100% | 149.4 MiB/s | 764.8 KiB |  00m00s
[  3/400] fftw-devel-0:3.3.10-13.fc41.a 100% |  65.1 MiB/s | 133.2 KiB |  00m00s
[  4/400] flexiblas-devel-0:3.4.4-3.fc4 100% |  29.7 MiB/s | 121.8 KiB |  00m00s
[  5/400] fmt-devel-0:11.0.2-2.fc42.aar 100% |  63.3 MiB/s | 129.6 KiB |  00m00s
[  6/400] doxygen-2:1.12.0-3.fc42.aarch 100% | 125.1 MiB/s |   5.4 MiB |  00m00s
[  7/400] cmake-0:3.31.2-1.fc42.aarch64 100% | 128.6 MiB/s |   7.5 MiB |  00m00s
[  8/400] gdb-0:15.2-4.fc42.aarch64     100% |   8.7 MiB/s | 151.6 KiB |  00m00s
[  9/400] gcc-c++-0:14.2.1-6.fc42.aarch 100% | 243.0 MiB/s |  12.9 MiB |  00m00s
[ 10/400] gettext-devel-0:0.22.5-6.fc41 100% |   8.9 MiB/s | 237.8 KiB |  00m00s
[ 11/400] hdf5-devel-0:1.14.5-1.fc42.aa 100% |  54.5 MiB/s |   1.4 MiB |  00m00s
[ 12/400] hdf5-openmpi-devel-0:1.14.5-1 100% | 108.6 MiB/s |   1.4 MiB |  00m00s
[ 13/400] hdf5-mpich-devel-0:1.14.5-1.f 100% |  88.6 MiB/s |   1.4 MiB |  00m00s
[ 14/400] m4-0:1.4.19-10.fc41.aarch64   100% |  22.6 MiB/s | 301.4 KiB |  00m00s
[ 15/400] make-1:4.4.1-9.fc42.aarch64   100% | 142.7 MiB/s | 584.6 KiB |  00m00s
[ 16/400] mpark-variant-devel-0:1.4.0-1 100% |   6.7 MiB/s |  27.5 KiB |  00m00s
[ 17/400] mpich-devel-0:4.2.2-1.fc42.aa 100% | 175.7 MiB/s |   1.6 MiB |  00m00s
[ 18/400] netcdf-devel-0:4.9.2-7.fc42.a 100% |  16.1 MiB/s |  99.1 KiB |  00m00s
[ 19/400] netcdf-cxx4-devel-0:4.3.1-13. 100% |   8.9 MiB/s |  73.0 KiB |  00m00s
[ 20/400] python3-0:3.13.1-2.fc42.aarch 100% |   8.8 MiB/s |  26.9 KiB |  00m00s
[ 21/400] python3-boutdata-0:0.2.1-7.fc 100% |  19.2 MiB/s | 157.4 KiB |  00m00s
[ 22/400] python3-boututils-0:0.2.1-6.f 100% |  27.2 MiB/s | 166.8 KiB |  00m00s
[ 23/400] openmpi-devel-0:5.0.6-1.fc42. 100% | 115.9 MiB/s |   2.3 MiB |  00m00s
[ 24/400] python3-devel-0:3.13.1-2.fc42 100% |  39.4 MiB/s | 403.0 KiB |  00m00s
[ 25/400] python3-netcdf4-0:1.7.2-1.fc4 100% | 122.8 MiB/s | 628.5 KiB |  00m00s
[ 26/400] python3-cython-0:3.0.11-1.fc4 100% | 165.7 MiB/s |   3.8 MiB |  00m00s
[ 27/400] python3-jinja2-0:3.1.4-5.fc41 100% |  34.4 MiB/s | 492.8 KiB |  00m00s
[ 28/400] python3-sphinx-1:7.3.7-2.fc41 100% | 175.4 MiB/s |   2.6 MiB |  00m00s
[ 29/400] python3-numpy-1:1.26.4-8.fc41 100% | 151.8 MiB/s |   6.8 MiB |  00m00s
[ 30/400] python3-scipy-0:1.14.1-1.fc42 100% | 241.7 MiB/s |  16.7 MiB |  00m00s
[ 31/400] python3-tables-0:3.10.1-3.fc4 100% |  30.7 MiB/s |   1.7 MiB |  00m00s
[ 32/400] python3-zoidberg-0:0.1.1-8.fc 100% |   3.7 MiB/s | 125.4 KiB |  00m00s
[ 33/400] sundials-debugsource-0:7.1.1- 100% |  72.1 MiB/s | 738.0 KiB |  00m00s
[ 34/400] sundials-debuginfo-0:7.1.1-1. 100% | 109.0 MiB/s |   1.9 MiB |  00m00s
[ 35/400] zlib-ng-compat-devel-0:2.2.2- 100% |  37.2 MiB/s |  38.1 KiB |  00m00s
[ 36/400] sundials-mpich-debuginfo-0:7. 100% |  85.8 MiB/s |   1.9 MiB |  00m00s
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[373/400] perl-if-0:0.61.000-512.fc42.n 100% |  13.6 MiB/s |  14.0 KiB |  00m00s
[374/400] perl-Text-Tabs+Wrap-0:2024.00 100% |  10.7 MiB/s |  21.9 KiB |  00m00s
[375/400] perl-locale-0:1.12-512.fc42.n 100% |  13.3 MiB/s |  13.6 KiB |  00m00s
[376/400] ncurses-0:6.5-2.20240629.fc41 100% | 206.4 MiB/s | 422.6 KiB |  00m00s
[377/400] perl-IO-Socket-IP-0:0.43-1.fc 100% |  20.6 MiB/s |  42.2 KiB |  00m00s
[378/400] dbus-broker-0:36-4.fc41.aarch 100% |  81.7 MiB/s | 167.3 KiB |  00m00s
[379/400] perl-AutoLoader-0:5.74-512.fc 100% |  20.7 MiB/s |  21.2 KiB |  00m00s
[380/400] perl-URI-0:5.31-1.fc42.noarch 100% |  68.7 MiB/s | 140.6 KiB |  00m00s
[381/400] dbus-common-1:1.14.10-4.fc41. 100% |   7.2 MiB/s |  14.7 KiB |  00m00s
[382/400] perl-Data-Dumper-0:2.189-512. 100% |  26.9 MiB/s |  55.1 KiB |  00m00s
[383/400] perl-MIME-Base32-0:1.303-21.f 100% |  10.0 MiB/s |  20.5 KiB |  00m00s
[384/400] perl-libnet-0:3.15-512.fc41.n 100% |  62.7 MiB/s | 128.5 KiB |  00m00s
[385/400] perl-B-0:1.89-512.fc42.aarch6 100% |  86.5 MiB/s | 177.1 KiB |  00m00s
[386/400] perl-Digest-MD5-0:2.59-5.fc41 100% |  35.2 MiB/s |  36.1 KiB |  00m00s
[387/400] perl-FileHandle-0:2.05-512.fc 100% |  15.1 MiB/s |  15.5 KiB |  00m00s
[388/400] perl-Digest-0:1.20-511.fc41.n 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[389/400] hdf-libs-0:4.3.0-1.fc42.aarch 100% |  90.3 MiB/s | 277.5 KiB |  00m00s
[390/400] hypre-mpich-0:2.32.0-1.fc42.a 100% | 243.0 MiB/s |   1.7 MiB |  00m00s
[391/400] annobin-plugin-gcc-0:12.79-1. 100% | 136.2 MiB/s | 975.9 KiB |  00m00s
[392/400] gcc-plugin-annobin-0:14.2.1-6 100% |  18.7 MiB/s |  57.3 KiB |  00m00s
[393/400] systemd-rpm-macros-0:257-1.fc 100% |  33.9 MiB/s |  34.7 KiB |  00m00s
[394/400] annobin-docs-0:12.79-1.fc42.n 100% |  45.2 MiB/s |  92.7 KiB |  00m00s
[395/400] pyproject-rpm-macros-0:1.16.3 100% |  43.6 MiB/s |  44.6 KiB |  00m00s
[396/400] python-rpm-macros-0:3.13-3.fc 100% |  17.3 MiB/s |  17.7 KiB |  00m00s
[397/400] hypre-openmpi-0:2.32.0-1.fc42 100% |  94.6 MiB/s |   1.7 MiB |  00m00s
[398/400] python3-rpm-macros-0:3.13-3.f 100% |   6.1 MiB/s |  12.4 KiB |  00m00s
[399/400] python3-rpm-generators-0:14-1 100% |   9.5 MiB/s |  29.3 KiB |  00m00s
[400/400] cmake-rpm-macros-0:3.31.2-1.f 100% |  16.5 MiB/s |  16.9 KiB |  00m00s
--------------------------------------------------------------------------------
[400/400] Total                         100% | 280.6 MiB/s | 427.8 MiB |  00m02s
Running transaction
[  1/402] Verify package files          100% | 260.0   B/s | 400.0   B |  00m02s
[  2/402] Prepare transaction           100% |   1.1 KiB/s | 400.0   B |  00m00s
[  3/402] Installing libgfortran-0:14.2 100% | 253.6 MiB/s |   1.5 MiB |  00m00s
[  4/402] Installing cmake-filesystem-0 100% |   3.7 MiB/s |   7.6 KiB |  00m00s
[  5/402] Installing libjpeg-turbo-0:3. 100% | 259.9 MiB/s | 798.5 KiB |  00m00s
[  6/402] Installing libpng-2:1.6.44-1. 100% | 163.7 MiB/s | 335.2 KiB |  00m00s
[  7/402] Installing nspr-0:4.36.0-2.fc 100% | 201.0 MiB/s | 411.6 KiB |  00m00s
[  8/402] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[  9/402] Installing urw-base35-fonts-c 100% |  37.5 MiB/s |  38.4 KiB |  00m00s
[ 10/402] Installing metis-0:5.1.0.3-6. 100% | 341.4 MiB/s |   2.0 MiB |  00m00s
[ 11/402] Installing hwloc-libs-0:2.11. 100% | 416.0 MiB/s |   2.9 MiB |  00m00s
[ 12/402] Installing libaec-0:1.1.3-1.f 100% | 201.5 MiB/s | 412.6 KiB |  00m00s
[ 13/402] Installing expat-0:2.6.4-1.fc 100% | 171.6 MiB/s | 351.4 KiB |  00m00s
[ 14/402] Installing libgpg-error-0:1.5 100% | 187.7 MiB/s | 960.9 KiB |  00m00s
[ 15/402] Installing libwebp-0:1.4.0-4. 100% | 309.7 MiB/s |   1.2 MiB |  00m00s
[ 16/402] Installing nss-util-0:3.107.0 100% | 208.1 MiB/s | 213.1 KiB |  00m00s
[ 17/402] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 18/402] Installing libmpc-0:1.3.1-6.f 100% | 137.8 MiB/s | 282.3 KiB |  00m00s
[ 19/402] Installing libassuan-0:2.5.7- 100% | 137.5 MiB/s | 281.7 KiB |  00m00s
[ 20/402] Installing hdf5-0:1.14.5-1.fc 100% | 299.5 MiB/s |   8.1 MiB |  00m00s
[ 21/402] Installing libaec-devel-0:1.1 100% |  13.2 MiB/s |  13.5 KiB |  00m00s
[ 22/402] Installing python-rpm-macros- 100% |  22.3 MiB/s |  22.8 KiB |  00m00s
[ 23/402] Installing openblas-0:0.3.28- 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 24/402] Installing libnl3-0:3.11.0-1. 100% | 260.1 MiB/s |   1.3 MiB |  00m00s
[ 25/402] Installing libibverbs-0:54.0- 100% | 208.7 MiB/s |   1.7 MiB |  00m00s
[ 26/402] Installing openjpeg-0:2.5.2-4 100% | 175.7 MiB/s | 539.7 KiB |  00m00s
[ 27/402] Installing lcms2-0:2.16-4.fc4 100% | 237.6 MiB/s | 486.5 KiB |  00m00s
[ 28/402] Installing munge-libs-0:0.5.1 100% | 192.4 MiB/s | 197.0 KiB |  00m00s
[ 29/402] Installing pmix-0:4.2.8-3.fc4 100% | 283.4 MiB/s |   2.6 MiB |  00m00s
[ 30/402] Installing tcl-1:8.6.15-6.fc4 100% | 228.7 MiB/s |   4.3 MiB |  00m00s
[ 31/402] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 32/402] Installing scalapack-common-0 100% |  27.6 MiB/s |  28.3 KiB |  00m00s
[ 33/402] Installing python3-matplotlib 100% | 316.5 MiB/s |   7.9 MiB |  00m00s
[ 34/402] Installing python3-matplotlib 100% | 145.0 MiB/s | 742.6 KiB |  00m00s
[ 35/402] Installing libseccomp-0:2.5.5 100% | 118.8 MiB/s | 243.3 KiB |  00m00s
[ 36/402] Installing libICE-0:1.1.1-4.f 100% | 268.1 MiB/s | 274.5 KiB |  00m00s
[ 37/402] Installing MUMPS-common-0:5.7 100% | 483.1 MiB/s | 989.4 KiB |  00m00s
[ 38/402] Installing fribidi-0:1.0.16-1 100% | 246.6 MiB/s | 505.1 KiB |  00m00s
[ 39/402] Installing adobe-mappings-cma 100% | 310.0 MiB/s |  15.2 MiB |  00m00s
[ 40/402] Installing libimagequant-0:4. 100% |  93.3 MiB/s | 668.7 KiB |  00m00s
[ 41/402] Installing tzdata-0:2024a-9.f 100% |  40.4 MiB/s |   1.9 MiB |  00m00s
[ 42/402] Installing libtextstyle-0:0.2 100% | 258.0 MiB/s | 264.2 KiB |  00m00s
[ 43/402] Installing gettext-libs-0:0.2 100% | 290.5 MiB/s |   2.0 MiB |  00m00s
[ 44/402] Installing libatomic-0:14.2.1 100% |  68.2 MiB/s |  69.8 KiB |  00m00s
[ 45/402] Installing fftw-libs-single-0 100% | 262.1 MiB/s |   2.4 MiB |  00m00s
[ 46/402] Installing fftw-libs-long-0:3 100% | 296.7 MiB/s |   2.7 MiB |  00m00s
[ 47/402] Installing fftw-libs-double-0 100% | 143.5 MiB/s |   2.3 MiB |  00m00s
[ 48/402] Installing groff-base-0:1.23. 100% | 179.3 MiB/s |   5.2 MiB |  00m00s
[ 49/402] Installing vim-filesystem-2:9 100% |   2.3 MiB/s |   4.7 KiB |  00m00s
[ 50/402] Installing less-0:668-1.fc42. 100% | 213.3 MiB/s | 873.6 KiB |  00m00s
[ 51/402] Installing jsoncpp-0:1.9.5-8. 100% | 164.7 MiB/s | 337.3 KiB |  00m00s
[ 52/402] Installing sundials-debuginfo 100% | 253.0 MiB/s |   8.6 MiB |  00m00s
[ 53/402] Installing make-1:4.4.1-9.fc4 100% | 231.4 MiB/s |   1.9 MiB |  00m00s
[ 54/402] Installing fftw-0:3.3.10-13.f 100% | 296.9 MiB/s | 608.0 KiB |  00m00s
[ 55/402] Installing fftw-libs-0:3.3.10 100% |   0.0   B/s | 124.0   B |  00m00s
[ 56/402] Installing adobe-mappings-cma 100% | 190.5 MiB/s | 585.2 KiB |  00m00s
[ 57/402] Installing libSM-0:1.2.4-4.fc 100% | 248.8 MiB/s | 254.7 KiB |  00m00s
[ 58/402] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB |  00m00s
[ 59/402] Installing librdmacm-0:54.0-3 100% | 103.9 MiB/s | 212.8 KiB |  00m00s
[ 60/402] Installing libfabric-0:1.22.0 100% | 301.2 MiB/s |   2.1 MiB |  00m00s
[ 61/402] Installing openblas-openmp-0: 100% | 403.3 MiB/s |  20.6 MiB |  00m00s
[ 62/402] Installing flexiblas-netlib-0 100% | 317.3 MiB/s |   9.8 MiB |  00m00s
[ 63/402] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 64/402] Installing flexiblas-openblas 100% | 191.7 MiB/s | 196.3 KiB |  00m00s
[ 65/402] Installing suitesparse-0:7.7. 100% | 397.1 MiB/s | 116.3 MiB |  00m00s
[ 66/402] Installing openblas-openmp64- 100% | 400.9 MiB/s |  20.4 MiB |  00m00s
[ 67/402] Installing flexiblas-netlib64 100% | 323.7 MiB/s |   9.7 MiB |  00m00s
[ 68/402] Installing flexiblas-openblas 100% | 191.7 MiB/s | 196.3 KiB |  00m00s
[ 69/402] Installing openblas-serial-0: 100% | 399.3 MiB/s |  19.6 MiB |  00m00s
[ 70/402] Installing suitesparse64-0:7. 100% | 397.1 MiB/s | 116.3 MiB |  00m00s
[ 71/402] Installing cpp-0:14.2.1-6.fc4 100% | 296.0 MiB/s |  33.7 MiB |  00m00s
[ 72/402] Installing nss-softokn-freebl 100% | 177.9 MiB/s | 728.8 KiB |  00m00s
[ 73/402] Installing nss-softokn-0:3.10 100% | 351.5 MiB/s |   2.1 MiB |  00m00s
[ 74/402] Installing nss-sysinit-0:3.10 100% |  68.5 MiB/s |  70.1 KiB |  00m00s
[ 75/402] Installing nss-0:3.107.0-1.fc 100% | 148.4 MiB/s |   1.9 MiB |  00m00s
[ 76/402] Installing libgcrypt-0:1.11.0 100% | 226.1 MiB/s |   1.1 MiB |  00m00s
[ 77/402] Installing libksba-0:1.6.7-2. 100% | 172.2 MiB/s | 529.0 KiB |  00m00s
[ 78/402] Installing graphviz-libs-0:12 100% | 218.3 MiB/s |   1.3 MiB |  00m00s
[ 79/402] Installing hdf-libs-0:4.3.0-1 100% | 277.5 MiB/s | 852.6 KiB |  00m00s
[ 80/402] Installing urw-base35-bookman 100% |  97.5 MiB/s |   1.4 MiB |  00m00s
[ 81/402] Installing urw-base35-c059-fo 100% | 126.8 MiB/s |   1.4 MiB |  00m00s
[ 82/402] Installing urw-base35-d050000 100% |  10.4 MiB/s |  85.4 KiB |  00m00s
[ 83/402] Installing urw-base35-gothic- 100% | 105.7 MiB/s |   1.2 MiB |  00m00s
[ 84/402] Installing urw-base35-nimbus- 100% | 105.2 MiB/s |   1.1 MiB |  00m00s
[ 85/402] Installing urw-base35-nimbus- 100% | 124.2 MiB/s |   1.4 MiB |  00m00s
[ 86/402] Installing urw-base35-nimbus- 100% | 171.0 MiB/s |   2.4 MiB |  00m00s
[ 87/402] Installing urw-base35-p052-fo 100% | 135.2 MiB/s |   1.5 MiB |  00m00s
[ 88/402] Installing urw-base35-standar 100% |   9.2 MiB/s |  66.0 KiB |  00m00s
[ 89/402] Installing urw-base35-z003-fo 100% |  47.8 MiB/s | 391.8 KiB |  00m00s
[ 90/402] Installing urw-base35-fonts-0 100% |   5.5 MiB/s |   5.6 KiB |  00m00s
[ 91/402] Installing dejavu-sans-fonts- 100% | 306.0 MiB/s |   5.5 MiB |  00m00s
[ 92/402] Installing google-droid-sans- 100% | 298.0 MiB/s |   6.3 MiB |  00m00s
[ 93/402] Installing abattis-cantarell- 100% |  94.9 MiB/s | 194.4 KiB |  00m00s
[ 94/402] Installing libssh-devel-0:0.1 100% | 176.1 MiB/s | 180.3 KiB |  00m00s
[ 95/402] Installing annobin-docs-0:12. 100% |  97.4 MiB/s |  99.7 KiB |  00m00s
[ 96/402] Installing dbus-common-1:1.14 100% | 589.2 KiB/s |  13.6 KiB |  00m00s
[ 97/402] Installing dbus-broker-0:36-4 100% |  66.9 MiB/s | 616.8 KiB |  00m00s
[ 98/402] Installing dbus-1:1.14.10-4.f 100% |   0.0   B/s | 124.0   B |  00m00s
[ 99/402] Installing systemd-pam-0:257- 100% | 144.0 MiB/s |   1.2 MiB |  00m00s
[100/402] Installing systemd-0:257-1.fc 100% |  94.7 MiB/s |  20.1 MiB |  00m00s
>>> Running post-install scriptlet: systemd-0:257-1.fc42.aarch64
>>> Finished post-install scriptlet: systemd-0:257-1.fc42.aarch64
>>> Scriptlet output:
>>> Creating group 'systemd-journal' with GID 190.
>>> Creating group 'systemd-oom' with GID 999.
>>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and 
>>> 
[101/402] Installing logrotate-0:3.22.0 100% |   7.8 MiB/s | 255.7 KiB |  00m00s
>>> Running post-install scriptlet: logrotate-0:3.22.0-2.fc41.aarch64
>>> Finished post-install scriptlet: logrotate-0:3.22.0-2.fc41.aarch64
>>> Scriptlet output:
>>> Created symlink '/etc/systemd/system/timers.target.wants/logrotate.timer' â†
>>> 
[102/402] Installing munge-0:0.5.16-3.f 100% |  59.0 MiB/s |   1.1 MiB |  00m00s
[103/402] Installing torque-libs-0:6.1. 100% | 169.7 MiB/s | 521.4 KiB |  00m00s
[104/402] Installing prrte-libs-0:3.0.6 100% | 211.6 MiB/s |   1.9 MiB |  00m00s
[105/402] Installing prrte-0:3.0.6-1.fc 100% | 323.9 MiB/s | 994.9 KiB |  00m00s
[106/402] Installing ncurses-0:6.5-2.20 100% | 337.8 MiB/s |   1.7 MiB |  00m00s
[107/402] Installing perl-Digest-0:1.20 100% |  36.2 MiB/s |  37.1 KiB |  00m00s
[108/402] Installing perl-B-0:1.89-512. 100% | 198.4 MiB/s | 609.4 KiB |  00m00s
[109/402] Installing perl-FileHandle-0: 100% |   0.0   B/s |   9.8 KiB |  00m00s
[110/402] Installing perl-Digest-MD5-0: 100% | 228.3 MiB/s | 233.8 KiB |  00m00s
[111/402] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[112/402] Installing perl-Data-Dumper-0 100% | 129.7 MiB/s | 265.7 KiB |  00m00s
[113/402] Installing perl-libnet-0:3.15 100% | 143.9 MiB/s | 294.7 KiB |  00m00s
[114/402] Installing perl-IO-Socket-IP- 100% |  99.8 MiB/s | 102.2 KiB |  00m00s
[115/402] Installing perl-AutoLoader-0: 100% |  20.5 MiB/s |  20.9 KiB |  00m00s
[116/402] Installing perl-URI-0:5.31-1. 100% |  65.8 MiB/s | 269.6 KiB |  00m00s
[117/402] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[118/402] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[119/402] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[120/402] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[121/402] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[122/402] Installing perl-locale-0:1.12 100% |   6.7 MiB/s |   6.9 KiB |  00m00s
[123/402] Installing perl-Net-SSLeay-0: 100% | 179.1 MiB/s |   1.4 MiB |  00m00s
[124/402] Installing perl-IO-Socket-SSL 100% | 230.3 MiB/s | 707.4 KiB |  00m00s
[125/402] Installing perl-Term-ANSIColo 100% |  96.9 MiB/s |  99.2 KiB |  00m00s
[126/402] Installing perl-Term-Cap-0:1. 100% |  29.9 MiB/s |  30.6 KiB |  00m00s
[127/402] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[128/402] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.1 KiB |  00m00s
[129/402] Installing perl-IPC-Open3-0:1 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[130/402] Installing perl-POSIX-0:2.20- 100% | 160.4 MiB/s | 328.5 KiB |  00m00s
[131/402] Installing perl-HTTP-Tiny-0:0 100% | 152.8 MiB/s | 156.4 KiB |  00m00s
[132/402] Installing perl-Pod-Simple-1: 100% | 139.3 MiB/s | 570.5 KiB |  00m00s
[133/402] Installing perl-Socket-4:2.03 100% | 133.9 MiB/s | 274.1 KiB |  00m00s
[134/402] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.6 KiB |  00m00s
[135/402] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.2 KiB |  00m00s
[136/402] Installing perl-File-stat-0:1 100% |  12.7 MiB/s |  13.1 KiB |  00m00s
[137/402] Installing perl-Pod-Perldoc-0 100% |  82.6 MiB/s | 169.3 KiB |  00m00s
[138/402] Installing perl-podlators-1:6 100% | 157.0 MiB/s | 321.4 KiB |  00m00s
[139/402] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[140/402] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  12.9 KiB |  00m00s
[141/402] Installing perl-Fcntl-0:1.18- 100% | 217.0 MiB/s | 222.2 KiB |  00m00s
[142/402] Installing perl-mro-0:1.29-51 100% | 205.9 MiB/s | 210.8 KiB |  00m00s
[143/402] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[144/402] Installing perl-IO-0:1.55-512 100% | 157.9 MiB/s | 323.4 KiB |  00m00s
[145/402] Installing perl-Pod-Usage-4:2 100% |  84.3 MiB/s |  86.3 KiB |  00m00s
[146/402] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[147/402] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[148/402] Installing perl-Getopt-Std-0: 100% |   0.0   B/s |  11.7 KiB |  00m00s
[149/402] Installing perl-MIME-Base64-0 100% | 219.2 MiB/s | 224.4 KiB |  00m00s
[150/402] Installing perl-constant-0:1. 100% |  26.7 MiB/s |  27.4 KiB |  00m00s
[151/402] Installing perl-parent-1:0.24 100% |   0.0   B/s |  10.9 KiB |  00m00s
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[345/402] Installing mpich-0:4.2.2-1.fc 100% | 293.2 MiB/s |   7.9 MiB |  00m00s
[346/402] Installing openmpi-0:5.0.6-1. 100% | 300.0 MiB/s |   7.2 MiB |  00m00s
[347/402] Installing ptscotch-mpich-0:7 100% | 250.8 MiB/s |   1.5 MiB |  00m00s
[348/402] Installing ptscotch-openmpi-0 100% | 250.8 MiB/s |   1.5 MiB |  00m00s
[349/402] Installing ptscotch-mpich-dev 100% |  51.8 MiB/s | 106.1 KiB |  00m00s
[350/402] Installing hdf5-openmpi-0:1.1 100% | 318.0 MiB/s |   7.9 MiB |  00m00s
[351/402] Installing scalapack-openmpi- 100% | 301.3 MiB/s |   4.5 MiB |  00m00s
[352/402] Installing hdf5-mpich-0:1.14. 100% | 318.0 MiB/s |   7.9 MiB |  00m00s
[353/402] Installing scalapack-mpich-0: 100% | 301.3 MiB/s |   4.5 MiB |  00m00s
[354/402] Installing rpm-mpi-hooks-0:8- 100% |   3.2 MiB/s |   9.7 KiB |  00m00s
[355/402] Installing mpich-devel-0:4.2. 100% |  74.1 MiB/s |   2.1 MiB |  00m00s
[356/402] Installing openmpi-devel-0:5. 100% | 121.5 MiB/s |   3.4 MiB |  00m00s
[357/402] Installing hdf5-openmpi-devel 100% | 344.9 MiB/s |   3.1 MiB |  00m00s
[358/402] Installing superlu_dist-openm 100% | 303.8 MiB/s |   1.5 MiB |  00m00s
[359/402] Installing superlu_dist-openm 100% | 205.2 MiB/s | 630.4 KiB |  00m00s
[360/402] Installing hypre-openmpi-0:2. 100% | 261.8 MiB/s |   4.2 MiB |  00m00s
[361/402] Installing sundials-openmpi-0 100% | 302.4 MiB/s |   6.0 MiB |  00m00s
[362/402] Installing hdf5-mpich-devel-0 100% | 345.5 MiB/s |   3.1 MiB |  00m00s
[363/402] Installing MUMPS-mpich-0:5.7. 100% | 354.1 MiB/s |   8.1 MiB |  00m00s
[364/402] Installing MUMPS-openmpi-0:5. 100% | 354.1 MiB/s |   8.1 MiB |  00m00s
[365/402] Installing petsc-openmpi-0:3. 100% | 301.4 MiB/s |  23.2 MiB |  00m00s
[366/402] Installing ptscotch-mpich-dev 100% |  38.9 MiB/s |  39.8 KiB |  00m00s
[367/402] Installing superlu_dist-mpich 100% | 303.8 MiB/s |   1.5 MiB |  00m00s
[368/402] Installing superlu_dist-mpich 100% | 204.7 MiB/s | 628.8 KiB |  00m00s
[369/402] Installing hypre-mpich-0:2.32 100% | 279.3 MiB/s |   4.2 MiB |  00m00s
[370/402] Installing petsc-mpich-0:3.22 100% | 301.4 MiB/s |  23.2 MiB |  00m00s
[371/402] Installing sundials-mpich-0:7 100% | 318.3 MiB/s |   6.0 MiB |  00m00s
[372/402] Installing xapian-core-libs-0 100% | 293.5 MiB/s |   2.1 MiB |  00m00s
[373/402] Installing rhash-0:1.4.5-1.fc 100% | 192.8 MiB/s | 592.4 KiB |  00m00s
[374/402] Installing libuv-1:1.49.2-1.f 100% |  54.3 MiB/s | 667.6 KiB |  00m00s
[375/402] Installing cmake-data-0:3.31. 100% |  73.6 MiB/s |   9.1 MiB |  00m00s
[376/402] Installing cmake-0:3.31.2-1.f 100% | 351.3 MiB/s |  28.8 MiB |  00m00s
[377/402] Installing doxygen-2:1.12.0-3 100% | 334.0 MiB/s |  19.7 MiB |  00m00s
[378/402] Installing sundials-mpich-dev 100% | 331.1 MiB/s |   7.3 MiB |  00m00s
[379/402] Installing petsc-mpich-devel- 100% | 334.4 MiB/s |  10.7 MiB |  00m00s
[380/402] Installing petsc-openmpi-deve 100% | 342.2 MiB/s |  11.3 MiB |  00m00s
[381/402] Installing sundials-openmpi-d 100% | 347.6 MiB/s |   7.3 MiB |  00m00s
[382/402] Installing fmt-devel-0:11.0.2 100% | 188.3 MiB/s | 578.4 KiB |  00m00s
[383/402] Installing gcc-c++-0:14.2.1-6 100% | 299.7 MiB/s |  36.9 MiB |  00m00s
[384/402] Installing gettext-devel-0:0. 100% | 189.0 MiB/s |   1.1 MiB |  00m00s
[385/402] Installing netcdf-cxx4-devel- 100% |  92.7 MiB/s | 474.7 KiB |  00m00s
[386/402] Installing python3-tables-0:3 100% | 300.8 MiB/s |  10.2 MiB |  00m00s
[387/402] Installing annobin-plugin-gcc 100% |  57.4 MiB/s | 998.9 KiB |  00m00s
[388/402] Installing gcc-plugin-annobin 100% |   2.9 MiB/s |  75.1 KiB |  00m00s
[389/402] Installing gdb-0:15.2-4.fc42. 100% | 146.1 MiB/s | 449.0 KiB |  00m00s
[390/402] Installing python3-boutdata-0 100% | 136.3 MiB/s | 558.2 KiB |  00m00s
[391/402] Installing python3-zoidberg-0 100% |  84.6 MiB/s | 519.5 KiB |  00m00s
[392/402] Installing python3-sphinx-1:7 100% | 162.2 MiB/s |  11.0 MiB |  00m00s
[393/402] Installing sundials-devel-0:7 100% | 347.5 MiB/s |   7.0 MiB |  00m00s
[394/402] Installing flexiblas-devel-0: 100% | 568.1 MiB/s |   5.1 MiB |  00m00s
[395/402] Installing fftw-devel-0:3.3.1 100% |  93.8 MiB/s | 288.2 KiB |  00m00s
[396/402] Installing sundials-mpich-deb 100% | 267.1 MiB/s |   8.5 MiB |  00m00s
[397/402] Installing sundials-openmpi-d 100% | 267.3 MiB/s |   8.6 MiB |  00m00s
[398/402] Installing mpark-variant-deve 100% | 116.4 MiB/s | 119.2 KiB |  00m00s
[399/402] Installing systemd-rpm-macros 100% |   5.5 MiB/s |  11.2 KiB |  00m00s
[400/402] Installing sundials-debugsour 100% | 276.3 MiB/s |  22.4 MiB |  00m00s
[401/402] Installing m4-0:1.4.19-10.fc4 100% | 131.8 MiB/s | 675.0 KiB |  00m00s
[402/402] Installing chrpath-0:0.16-24. 100% | 289.3 KiB/s | 232.3 KiB |  00m01s
Warning: skipped OpenPGP checks for 19 packages from repository: copr_sagitter_ForTesting
Complete!
Finish: build setup for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Start: rpmbuild bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1733961600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.ZBtzzN
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ test -d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RjOsW2
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ rm -rf BOUT++-v5.2.0.dev574+ge3f21cd2f
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/wait-finalise.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Gnvbbt
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ export CC=mpicc
+ CC=mpicc
+ export CXX=mpicxx
+ CXX=mpicxx
+ for mpi in openmpi mpich
+ mkdir build_openmpi
+ for mpi in openmpi mpich
+ mkdir build_mpich
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64
+ eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-aarch64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-aarch64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-aarch64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-aarch64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-aarch64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-aarch64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 14.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:396 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.13 (found suitable version "3.13.1", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.4")
-- Found Cython: TRUE (found version "3.0.11")
-- Found Bash: /usr/bin/bash (found version "5.2.37")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/openmpi-aarch64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
CMake Warning at cmake/SetupBOUTThirdParty.cmake:217 (find_package):
  By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "ADIOS2", but
  CMake did not find one.

  Could not find a package configuration file provided by "ADIOS2" with any
  of the following names:

    ADIOS2Config.cmake
    adios2-config.cmake

  Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set
  "ADIOS2_DIR" to a directory containing one of the above files.  If "ADIOS2"
  provides a separate development package or SDK, be sure it has been
  installed.
Call Stack (most recent call first):
  CMakeLists.txt:479 (include)


-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- The C compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22.5")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.12.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi` to compile BOUT++ ***

-- Configuring done (5.4s)
-- Generating done (0.4s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi
+ /usr/bin/cmake --build build_openmpi -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
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/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
/usr/bin/gmake  -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
[  0%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/es/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/pvbbdpre.cpp
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/es/libbout.po
[  0%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/de/
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/de/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
[  2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/fr/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/fr/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_CN/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_CN/libbout.po
[  2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_TW/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_TW/libbout.po
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/band.cpp
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  2%] Built target mofiles
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/llnlmath.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvspgmr.cpp
[  8%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvdiag.cpp
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 11%] Built target pvpre
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
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/usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
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[ 17%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field.cxx
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field2d.cxx
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx:35:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_data.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_data.cxx:2:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_factory.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldgenerators.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy/laplacexy.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/laplacexz.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/parderiv/impls/cyclic/cyclic.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/parderiv/invert_parderiv.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/pardiv/invert_pardiv.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_region.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.hxx:31,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromfile.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:48:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
  471 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
  442 |   comm_handle xin, xout;
      |                    ^~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/index_derivs.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation_xz.cxx
In file included from /usr/include/c++/14/bits/shared_ptr.h:53,
                 from /usr/include/c++/14/memory:80,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field3d.hxx:204:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2300:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:106:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2311:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/bilinear_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/interpolation_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/mesh.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.hxx:31,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.cxx:39:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/identity.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx:9:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx:32:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 60%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o
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[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In destructor ‘virtual ArkodeSolver::~ArkodeSolver()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:154:14: warning: ‘void ARKStepFree(void**)’ is deprecated: use ARKodeFree instead [-Wdeprecated-declarations]
  154 |   ARKStepFree(&arkode_mem);
      |   ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:43:
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:399:6: note: declared here
  399 | void ARKStepFree(void** arkode_mem);
      |      ^~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::init()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:240:25: warning: ‘int ARKStepSetUserData(void*, void*)’ is deprecated: use ARKodeSetUserData instead [-Wdeprecated-declarations]
  240 |   if (ARKStepSetUserData(arkode_mem, this) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:229:5: note: declared here
  229 | int ARKStepSetUserData(void* arkode_mem, void* user_data);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:244:23: warning: ‘int ARKStepSetLinear(void*, int)’ is deprecated: use ARKodeSetLinear instead [-Wdeprecated-declarations]
  244 |   if (ARKStepSetLinear(arkode_mem, set_linear) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:148:5: note: declared here
  148 | int ARKStepSetLinear(void* arkode_mem, int timedepend);
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:251:28: warning: ‘int ARKStepSetFixedStep(void*, sunrealtype)’ is deprecated: use ARKodeSetFixedStep instead [-Wdeprecated-declarations]
  251 |     if (ARKStepSetFixedStep(arkode_mem, fixed_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:221:5: note: declared here
  221 | int ARKStepSetFixedStep(void* arkode_mem, sunrealtype hfixed);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:256:22: warning: ‘int ARKStepSetOrder(void*, int)’ is deprecated: use ARKodeSetOrder instead [-Wdeprecated-declarations]
  256 |   if (ARKStepSetOrder(arkode_mem, order) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:136:5: note: declared here
  136 | int ARKStepSetOrder(void* arkode_mem, int maxord);
      |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:272:28: warning: ‘int ARKStepSetCFLFraction(void*, sunrealtype)’ is deprecated: use ARKodeSetCFLFraction instead [-Wdeprecated-declarations]
  272 |   if (ARKStepSetCFLFraction(arkode_mem, cfl_frac) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:158:5: note: declared here
  158 | int ARKStepSetCFLFraction(void* arkode_mem, sunrealtype cfl_frac);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:300:32: warning: ‘int ARKStepSetAdaptController(void*, SUNAdaptController)’ is deprecated: use ARKodeSetAdaptController instead [-Wdeprecated-declarations]
  300 |   if (ARKStepSetAdaptController(arkode_mem, controller) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:154:5: note: declared here
  154 | int ARKStepSetAdaptController(void* arkode_mem, SUNAdaptController C);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:304:37: warning: ‘int ARKStepSetAdaptivityAdjustment(void*, int)’ is deprecated: use ARKodeSetAdaptivityAdjustment instead [-Wdeprecated-declarations]
  304 |   if (ARKStepSetAdaptivityAdjustment(arkode_mem, 0) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:156:5: note: declared here
  156 | int ARKStepSetAdaptivityAdjustment(void* arkode_mem, int adjust);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:368:28: warning: ‘int ARKStepSVtolerances(void*, sunrealtype, N_Vector)’ is deprecated: use ARKodeSVtolerances instead [-Wdeprecated-declarations]
  368 |     if (ARKStepSVtolerances(arkode_mem, reltol, abstolvec) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:115:5: note: declared here
  115 | int ARKStepSVtolerances(void* arkode_mem, sunrealtype reltol, N_Vector abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:374:28: warning: ‘int ARKStepSStolerances(void*, sunrealtype, sunrealtype)’ is deprecated: use ARKodeSStolerances instead [-Wdeprecated-declarations]
  374 |     if (ARKStepSStolerances(arkode_mem, reltol, abstol) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:113:5: note: declared here
  113 | int ARKStepSStolerances(void* arkode_mem, sunrealtype reltol, sunrealtype abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:379:28: warning: ‘int ARKStepSetMaxNumSteps(void*, long int)’ is deprecated: use ARKodeSetMaxNumSteps instead [-Wdeprecated-declarations]
  379 |   if (ARKStepSetMaxNumSteps(arkode_mem, mxsteps) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:205:5: note: declared here
  205 | int ARKStepSetMaxNumSteps(void* arkode_mem, long int mxsteps);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:384:26: warning: ‘int ARKStepSetMaxStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMaxStep instead [-Wdeprecated-declarations]
  384 |     if (ARKStepSetMaxStep(arkode_mem, max_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:213:5: note: declared here
  213 | int ARKStepSetMaxStep(void* arkode_mem, sunrealtype hmax);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:390:26: warning: ‘int ARKStepSetMinStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMinStep instead [-Wdeprecated-declarations]
  390 |     if (ARKStepSetMinStep(arkode_mem, min_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:211:5: note: declared here
  211 | int ARKStepSetMinStep(void* arkode_mem, sunrealtype hmin);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:396:27: warning: ‘int ARKStepSetInitStep(void*, sunrealtype)’ is deprecated: use ARKodeSetInitStep instead [-Wdeprecated-declarations]
  396 |     if (ARKStepSetInitStep(arkode_mem, start_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:209:5: note: declared here
  209 | int ARKStepSetInitStep(void* arkode_mem, sunrealtype hin);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:408:36: warning: ‘int ARKStepSetNonlinearSolver(void*, SUNNonlinearSolver)’ is deprecated: use ARKodeSetNonlinearSolver instead [-Wdeprecated-declarations]
  408 |       if (ARKStepSetNonlinearSolver(arkode_mem, nonlinear_solver) != ARK_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:144:5: note: declared here
  144 | int ARKStepSetNonlinearSolver(void* arkode_mem, SUNNonlinearSolver NLS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:420:33: warning: ‘int ARKStepSetLinearSolver(void*, SUNLinearSolver, SUNMatrix)’ is deprecated: use ARKodeSetLinearSolver instead [-Wdeprecated-declarations]
  420 |       if (ARKStepSetLinearSolver(arkode_mem, sun_solver, nullptr) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:125:5: note: declared here
  125 | int ARKStepSetLinearSolver(void* arkode_mem, SUNLinearSolver LS, SUNMatrix A);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:429:39: warning: ‘int ARKStepSetPreconditioner(void*, ARKLsPrecSetupFn, ARKLsPrecSolveFn)’ is deprecated: use ARKodeSetPreconditioner instead [-Wdeprecated-declarations]
  429 |           if (ARKStepSetPreconditioner(arkode_mem, nullptr, arkode_pre)
      |               ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:253:5: note: declared here
  253 | int ARKStepSetPreconditioner(void* arkode_mem, ARKLsPrecSetupFn psetup,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:483:29: warning: ‘int ARKStepSetJacTimes(void*, ARKLsJacTimesSetupFn, ARKLsJacTimesVecFn)’ is deprecated: use ARKodeSetJacTimes instead [-Wdeprecated-declarations]
  483 |       if (ARKStepSetJacTimes(arkode_mem, nullptr, arkode_jac) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:259:5: note: declared here
  259 | int ARKStepSetJacTimes(void* arkode_mem, ARKLsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:493:32: warning: ‘int ARKStepSetOptimalParams(void*)’ is deprecated: adjust parameters individually instead [-Wdeprecated-declarations]
  493 |     if (ARKStepSetOptimalParams(arkode_mem) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:134:5: note: declared here
  134 | int ARKStepSetOptimalParams(void* arkode_mem);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:526:23: warning: ‘int ARKStepGetNumSteps(void*, long int*)’ is deprecated: use ARKodeGetNumSteps instead [-Wdeprecated-declarations]
  526 |     ARKStepGetNumSteps(arkode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:290:5: note: declared here
  290 | int ARKStepGetNumSteps(void* arkode_mem, long int* nsteps);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:532:35: warning: ‘int ARKStepGetNumNonlinSolvIters(void*, long int*)’ is deprecated: use ARKodeGetNumNonlinSolvIters instead [-Wdeprecated-declarations]
  532 |       ARKStepGetNumNonlinSolvIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:337:5: note: declared here
  337 | int ARKStepGetNumNonlinSolvIters(void* arkode_mem, long int* nniters);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:534:29: warning: ‘int ARKStepGetNumPrecEvals(void*, long int*)’ is deprecated: use ARKodeGetNumPrecEvals instead [-Wdeprecated-declarations]
  534 |       ARKStepGetNumPrecEvals(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:357:5: note: declared here
  357 | int ARKStepGetNumPrecEvals(void* arkode_mem, long int* npevals);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:536:28: warning: ‘int ARKStepGetNumLinIters(void*, long int*)’ is deprecated: use ARKodeGetNumLinIters instead [-Wdeprecated-declarations]
  536 |       ARKStepGetNumLinIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:361:5: note: declared here
  361 | int ARKStepGetNumLinIters(void* arkode_mem, long int* nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘BoutReal ArkodeSolver::run(BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:574:25: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  574 |     flag = ARKStepEvolve(arkode_mem, tout, uvec, &simtime, ARK_NORMAL);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:578:26: warning: ‘int ARKStepGetCurrentTime(void*, sunrealtype*)’ is deprecated: use ARKodeGetCurrentTime instead [-Wdeprecated-declarations]
  578 |     ARKStepGetCurrentTime(arkode_mem, &internal_time);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:298:5: note: declared here
  298 | int ARKStepGetCurrentTime(void* arkode_mem, sunrealtype* tcur);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:582:27: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  582 |       flag = ARKStepEvolve(arkode_mem, tout, uvec, &internal_time, ARK_ONE_STEP);
      |              ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:594:25: warning: ‘int ARKStepGetDky(void*, sunrealtype, int, N_Vector)’ is deprecated: use ARKodeGetDky instead [-Wdeprecated-declarations]
  594 |     flag = ARKStepGetDky(arkode_mem, tout, 0, uvec);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:272:5: note: declared here
  272 | int ARKStepGetDky(void* arkode_mem, sunrealtype t, int k, N_Vector dky);
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_e(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:624:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  624 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_i(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:641:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  641 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:654:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  654 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutexception.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/derivs.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/generator_context.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_adios.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/optionsreader.cxx
In file included from /usr/include/openmpi-aarch64/ncFile.h:2,
                 from /usr/include/openmpi-aarch64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:7:
/usr/include/openmpi-aarch64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
In file included from /usr/include/openmpi-aarch64/ncFile.h:2,
                 from /usr/include/openmpi-aarch64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:5:
/usr/include/openmpi-aarch64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/output.cxx.o -MF CMakeFiles/bout++.dir/src/sys/output.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/output.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/output.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/petsclib.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/range.cxx.o
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[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
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CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.11.0.2 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/lIn member function ‘__ct ’,
    inlined from ‘_Construct’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘construct’ at /usr/include/c++/14/bits/alloc_traits.h:694:19,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:607:39,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:969:16,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:1713:14,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr.h:463:59,
    inlined from ‘make_shared’ at /usr/include/c++/14/bits/shared_ptr.h:1008:39,
    inlined from ‘get’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:428:38,
    inlined from ‘reallocate’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:226:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/spt/spt.cxx:68:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:75:12: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   75 |     data = new T[len];
      |            ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
ibsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target bout++
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Generating boutpp.pyx
[ 94%] Generating helper.cxx
[ 94%] Generating resolve_enum.pxd
[ 97%] Generating boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Generating helper.h
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h
[ 97%] Generating libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.13 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2172:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx
In file included from /usr/include/numpy/ndarraytypes.h:1929,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:1268:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:41433:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
41433 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9427:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
 9427 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9070:12: note: ‘__pyx_r’ was declared here
 9070 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:66588:42:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:66682:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
66682 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 3129, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:10938:18: note: ‘__pyx_r’ was declared here
10938 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-313-aarch64-linux-gnu.so -o libboutpp.cpython-313-aarch64-linux-gnu.so "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target boutpp.cpython-313-aarch64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0

+ PYPA=
+ LDPA=/usr/lib64/openmpi/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib/
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib/
+ /usr/bin/cmake --build build_openmpi/manual -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/gmake  -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build
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[100%] Generating HTML documentation with Sphinx in /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
docstring of libboutpp.Laplacian:6: ERROR: Unknown target name: "abla".
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/usr/lib/python3.13/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
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/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
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/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent.
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none found
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
generating indices... /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 132 warnings.

The HTML pages are in docs.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target sphinx-html
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
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[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0

+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-aarch64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-aarch64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-aarch64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-aarch64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-aarch64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-aarch64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-aarch64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-aarch64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-aarch64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-aarch64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-aarch64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-aarch64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.13/site-packages/mpich -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 14.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:396 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.13 (found suitable version "3.13.1", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.4")
-- Found Cython: TRUE (found version "3.0.11")
-- Found Bash: /usr/bin/bash (found version "5.2.37")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/mpich-aarch64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
CMake Warning at cmake/SetupBOUTThirdParty.cmake:217 (find_package):
  By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "ADIOS2", but
  CMake did not find one.

  Could not find a package configuration file provided by "ADIOS2" with any
  of the following names:

    ADIOS2Config.cmake
    adios2-config.cmake

  Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set
  "ADIOS2_DIR" to a directory containing one of the above files.  If "ADIOS2"
  provides a separate development package or SDK, be sure it has been
  installed.
Call Stack (most recent call first):
  CMakeLists.txt:479 (include)


-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- The C compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22.5")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.12.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich` to compile BOUT++ ***

-- Configuring done (6.8s)
-- Generating done (0.4s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich
+ /usr/bin/cmake --build build_mpich -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/pvbbdpre.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/es/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/es/libbout.po
[  0%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/de/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/de/libbout.po
[  2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/fr/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/fr/libbout.po
[  2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_CN/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_CN/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
[  2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_TW/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_TW/libbout.po
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  2%] Built target mofiles
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/llnlmath.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/band.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvspgmr.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[  8%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvdiag.cpp
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 11%] Built target pvpre
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 14%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
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[ 14%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field2d.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx:35:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_data.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_data.cxx:2:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_factory.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldgenerators.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldperp.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -MF CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/generated_fieldops.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -MF CMakeFiles/bout++.dir/src/field/globalfield.cxx.o.d -o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/globalfield.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -MF CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o.d -o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/initialprofiles.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vecops.cxx.o -MF CMakeFiles/bout++.dir/src/field/vecops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vecops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vecops.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/vector2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vector2d.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy/laplacexy.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/laplacexz.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/parderiv/impls/cyclic/cyclic.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/parderiv/invert_parderiv.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/pardiv/invert_pardiv.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_region.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.hxx:31,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromfile.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:48:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
  471 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
  442 |   comm_handle xin, xout;
      |                    ^~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/index_derivs.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/bilinear_xz.cxx
In file included from /usr/include/c++/14/bits/shared_ptr.h:53,
                 from /usr/include/c++/14/memory:80,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field3d.hxx:204:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2300:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:106:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2311:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/interpolation_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/mesh.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.hxx:31,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.cxx:39:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/identity.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx:9:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx:32:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_op.hxx:7,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
[ 60%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_region.cxx
[ 60%] Building CXX object CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/surfaceiter.cxx
[ 60%] Building CXX object CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/gyro_average.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/adams_bashforth/adams_bashforth.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In destructor ‘virtual ArkodeSolver::~ArkodeSolver()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:154:14: warning: ‘void ARKStepFree(void**)’ is deprecated: use ARKodeFree instead [-Wdeprecated-declarations]
  154 |   ARKStepFree(&arkode_mem);
      |   ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:43:
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:399:6: note: declared here
  399 | void ARKStepFree(void** arkode_mem);
      |      ^~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::init()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:240:25: warning: ‘int ARKStepSetUserData(void*, void*)’ is deprecated: use ARKodeSetUserData instead [-Wdeprecated-declarations]
  240 |   if (ARKStepSetUserData(arkode_mem, this) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:229:5: note: declared here
  229 | int ARKStepSetUserData(void* arkode_mem, void* user_data);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:244:23: warning: ‘int ARKStepSetLinear(void*, int)’ is deprecated: use ARKodeSetLinear instead [-Wdeprecated-declarations]
  244 |   if (ARKStepSetLinear(arkode_mem, set_linear) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:148:5: note: declared here
  148 | int ARKStepSetLinear(void* arkode_mem, int timedepend);
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:251:28: warning: ‘int ARKStepSetFixedStep(void*, sunrealtype)’ is deprecated: use ARKodeSetFixedStep instead [-Wdeprecated-declarations]
  251 |     if (ARKStepSetFixedStep(arkode_mem, fixed_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:221:5: note: declared here
  221 | int ARKStepSetFixedStep(void* arkode_mem, sunrealtype hfixed);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:256:22: warning: ‘int ARKStepSetOrder(void*, int)’ is deprecated: use ARKodeSetOrder instead [-Wdeprecated-declarations]
  256 |   if (ARKStepSetOrder(arkode_mem, order) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:136:5: note: declared here
  136 | int ARKStepSetOrder(void* arkode_mem, int maxord);
      |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:272:28: warning: ‘int ARKStepSetCFLFraction(void*, sunrealtype)’ is deprecated: use ARKodeSetCFLFraction instead [-Wdeprecated-declarations]
  272 |   if (ARKStepSetCFLFraction(arkode_mem, cfl_frac) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:158:5: note: declared here
  158 | int ARKStepSetCFLFraction(void* arkode_mem, sunrealtype cfl_frac);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:300:32: warning: ‘int ARKStepSetAdaptController(void*, SUNAdaptController)’ is deprecated: use ARKodeSetAdaptController instead [-Wdeprecated-declarations]
  300 |   if (ARKStepSetAdaptController(arkode_mem, controller) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:154:5: note: declared here
  154 | int ARKStepSetAdaptController(void* arkode_mem, SUNAdaptController C);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:304:37: warning: ‘int ARKStepSetAdaptivityAdjustment(void*, int)’ is deprecated: use ARKodeSetAdaptivityAdjustment instead [-Wdeprecated-declarations]
  304 |   if (ARKStepSetAdaptivityAdjustment(arkode_mem, 0) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:156:5: note: declared here
  156 | int ARKStepSetAdaptivityAdjustment(void* arkode_mem, int adjust);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:368:28: warning: ‘int ARKStepSVtolerances(void*, sunrealtype, N_Vector)’ is deprecated: use ARKodeSVtolerances instead [-Wdeprecated-declarations]
  368 |     if (ARKStepSVtolerances(arkode_mem, reltol, abstolvec) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:115:5: note: declared here
  115 | int ARKStepSVtolerances(void* arkode_mem, sunrealtype reltol, N_Vector abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:374:28: warning: ‘int ARKStepSStolerances(void*, sunrealtype, sunrealtype)’ is deprecated: use ARKodeSStolerances instead [-Wdeprecated-declarations]
  374 |     if (ARKStepSStolerances(arkode_mem, reltol, abstol) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:113:5: note: declared here
  113 | int ARKStepSStolerances(void* arkode_mem, sunrealtype reltol, sunrealtype abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:379:28: warning: ‘int ARKStepSetMaxNumSteps(void*, long int)’ is deprecated: use ARKodeSetMaxNumSteps instead [-Wdeprecated-declarations]
  379 |   if (ARKStepSetMaxNumSteps(arkode_mem, mxsteps) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:205:5: note: declared here
  205 | int ARKStepSetMaxNumSteps(void* arkode_mem, long int mxsteps);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:384:26: warning: ‘int ARKStepSetMaxStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMaxStep instead [-Wdeprecated-declarations]
  384 |     if (ARKStepSetMaxStep(arkode_mem, max_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:213:5: note: declared here
  213 | int ARKStepSetMaxStep(void* arkode_mem, sunrealtype hmax);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:390:26: warning: ‘int ARKStepSetMinStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMinStep instead [-Wdeprecated-declarations]
  390 |     if (ARKStepSetMinStep(arkode_mem, min_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:211:5: note: declared here
  211 | int ARKStepSetMinStep(void* arkode_mem, sunrealtype hmin);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:396:27: warning: ‘int ARKStepSetInitStep(void*, sunrealtype)’ is deprecated: use ARKodeSetInitStep instead [-Wdeprecated-declarations]
  396 |     if (ARKStepSetInitStep(arkode_mem, start_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:209:5: note: declared here
  209 | int ARKStepSetInitStep(void* arkode_mem, sunrealtype hin);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:408:36: warning: ‘int ARKStepSetNonlinearSolver(void*, SUNNonlinearSolver)’ is deprecated: use ARKodeSetNonlinearSolver instead [-Wdeprecated-declarations]
  408 |       if (ARKStepSetNonlinearSolver(arkode_mem, nonlinear_solver) != ARK_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:144:5: note: declared here
  144 | int ARKStepSetNonlinearSolver(void* arkode_mem, SUNNonlinearSolver NLS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:420:33: warning: ‘int ARKStepSetLinearSolver(void*, SUNLinearSolver, SUNMatrix)’ is deprecated: use ARKodeSetLinearSolver instead [-Wdeprecated-declarations]
  420 |       if (ARKStepSetLinearSolver(arkode_mem, sun_solver, nullptr) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:125:5: note: declared here
  125 | int ARKStepSetLinearSolver(void* arkode_mem, SUNLinearSolver LS, SUNMatrix A);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:429:39: warning: ‘int ARKStepSetPreconditioner(void*, ARKLsPrecSetupFn, ARKLsPrecSolveFn)’ is deprecated: use ARKodeSetPreconditioner instead [-Wdeprecated-declarations]
  429 |           if (ARKStepSetPreconditioner(arkode_mem, nullptr, arkode_pre)
      |               ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:253:5: note: declared here
  253 | int ARKStepSetPreconditioner(void* arkode_mem, ARKLsPrecSetupFn psetup,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:483:29: warning: ‘int ARKStepSetJacTimes(void*, ARKLsJacTimesSetupFn, ARKLsJacTimesVecFn)’ is deprecated: use ARKodeSetJacTimes instead [-Wdeprecated-declarations]
  483 |       if (ARKStepSetJacTimes(arkode_mem, nullptr, arkode_jac) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:259:5: note: declared here
  259 | int ARKStepSetJacTimes(void* arkode_mem, ARKLsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:493:32: warning: ‘int ARKStepSetOptimalParams(void*)’ is deprecated: adjust parameters individually instead [-Wdeprecated-declarations]
  493 |     if (ARKStepSetOptimalParams(arkode_mem) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:134:5: note: declared here
  134 | int ARKStepSetOptimalParams(void* arkode_mem);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:526:23: warning: ‘int ARKStepGetNumSteps(void*, long int*)’ is deprecated: use ARKodeGetNumSteps instead [-Wdeprecated-declarations]
  526 |     ARKStepGetNumSteps(arkode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:290:5: note: declared here
  290 | int ARKStepGetNumSteps(void* arkode_mem, long int* nsteps);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:532:35: warning: ‘int ARKStepGetNumNonlinSolvIters(void*, long int*)’ is deprecated: use ARKodeGetNumNonlinSolvIters instead [-Wdeprecated-declarations]
  532 |       ARKStepGetNumNonlinSolvIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:337:5: note: declared here
  337 | int ARKStepGetNumNonlinSolvIters(void* arkode_mem, long int* nniters);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:534:29: warning: ‘int ARKStepGetNumPrecEvals(void*, long int*)’ is deprecated: use ARKodeGetNumPrecEvals instead [-Wdeprecated-declarations]
  534 |       ARKStepGetNumPrecEvals(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:357:5: note: declared here
  357 | int ARKStepGetNumPrecEvals(void* arkode_mem, long int* npevals);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:536:28: warning: ‘int ARKStepGetNumLinIters(void*, long int*)’ is deprecated: use ARKodeGetNumLinIters instead [-Wdeprecated-declarations]
  536 |       ARKStepGetNumLinIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:361:5: note: declared here
  361 | int ARKStepGetNumLinIters(void* arkode_mem, long int* nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘BoutReal ArkodeSolver::run(BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:574:25: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  574 |     flag = ARKStepEvolve(arkode_mem, tout, uvec, &simtime, ARK_NORMAL);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:578:26: warning: ‘int ARKStepGetCurrentTime(void*, sunrealtype*)’ is deprecated: use ARKodeGetCurrentTime instead [-Wdeprecated-declarations]
  578 |     ARKStepGetCurrentTime(arkode_mem, &internal_time);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:298:5: note: declared here
  298 | int ARKStepGetCurrentTime(void* arkode_mem, sunrealtype* tcur);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:582:27: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  582 |       flag = ARKStepEvolve(arkode_mem, tout, uvec, &internal_time, ARK_ONE_STEP);
      |              ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:594:25: warning: ‘int ARKStepGetDky(void*, sunrealtype, int, N_Vector)’ is deprecated: use ARKodeGetDky instead [-Wdeprecated-declarations]
  594 |     flag = ARKStepGetDky(arkode_mem, tout, 0, uvec);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:272:5: note: declared here
  272 | int ARKStepGetDky(void* arkode_mem, sunrealtype t, int k, N_Vector dky);
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_e(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:624:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  624 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_i(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:641:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  641 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:654:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  654 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-aarch64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -MF CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/bout_types.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutexception.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/derivs.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/generator_context.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/msg_stack.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_adios.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/optionsreader.cxx
In file included from /usr/include/mpich-aarch64/ncFile.h:2,
                 from /usr/include/mpich-aarch64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:7:
/usr/include/mpich-aarch64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
In file included from /usr/include/mpich-aarch64/ncFile.h:2,
                 from /usr/include/mpich-aarch64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:5:
/usr/include/mpich-aarch64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/output.cxx.o -MF CMakeFiles/bout++.dir/src/sys/output.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/output.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/output.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
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CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o" "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o" CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o CMakeFiles/bout++.dir/src/physics/snb.cxx.o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.11.0.2 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.sIn member function ‘__ct ’,
    inlined from ‘_Construct’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘construct’ at /usr/include/c++/14/bits/alloc_traits.h:694:19,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:607:39,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:969:16,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:1713:14,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr.h:463:59,
    inlined from ‘make_shared’ at /usr/include/c++/14/bits/shared_ptr.h:1008:39,
    inlined from ‘get’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:428:38,
    inlined from ‘reallocate’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:226:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/spt/spt.cxx:68:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:75:12: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   75 |     data = new T[len];
      |            ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
o.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Built target bout++
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 97%] Generating boutcpp.pxd
[ 94%] Generating boutpp.pyx
[ 94%] Generating resolve_enum.pxd
[ 97%] Generating helper.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Generating helper.h
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h
[ 97%] Generating libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.13 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2172:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_aarch64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx
In file included from /usr/include/numpy/ndarraytypes.h:1929,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:1268:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:41433:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
41433 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9427:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
 9427 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9070:12: note: ‘__pyx_r’ was declared here
 9070 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:66588:42:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:66682:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
66682 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 3129, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:10938:18: note: ‘__pyx_r’ was declared here
10938 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-313-aarch64-linux-gnu.so -o libboutpp.cpython-313-aarch64-linux-gnu.so "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target boutpp.cpython-313-aarch64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 0

+ PYPA=
+ LDPA=/usr/lib64/mpich/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib/
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib/
+ /usr/bin/cmake --build build_mpich/manual -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/gmake  -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build
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[100%] Generating HTML documentation with Sphinx in /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs
Running Sphinx v7.3.7
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/usr/lib/python3.13/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
docstring of libboutpp.Laplacian:6: WARNING: Block quote ends without a blank line; unexpected unindent.
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
docstring of libboutpp.Laplacian:6: ERROR: Unknown target name: "abla".
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
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WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
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/usr/lib/python3.13/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'spectrogram' from module 'boututils'; the following exception was raised:
cannot import name 'pi' from 'scipy' (/usr/lib64/python3.13/site-packages/scipy/__init__.py)
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation.
looking for now-outdated files... /usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
/usr/lib/python3.13/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them
/usr/lib/python3.13/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them
/usr/lib/python3.13/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
WARNING: unsupported theme option 'use_repository_button' given
done
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
copying assets... copying static files... done
copying extra files... done
done
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

generating indices... /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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build succeeded, 132 warnings.

The HTML pages are in docs.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target sphinx-html
/usr/bin/gmake  -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 0

+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pb0quY
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ '[' /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
++ dirname /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ mkdir /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64
+ eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-aarch64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-aarch64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-aarch64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-aarch64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-aarch64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_openmpi
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.1.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.1.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/adios_object.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/constants.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/coordinates_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/fieldgroup.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/fv_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/globalfield.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/griddata.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/operatorstencil.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/options_io.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-aarch64/bout++/bout/parallel_boundary_region.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/bout++
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_openmpi/manual
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/basic.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/documentation_options.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/language_data.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/minus.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/plus.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/searchtools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/contents.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css/custom.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/index.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/adios2.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//api_reference.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//index.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/adios2.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/advanced_install.html
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//objects.inv
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-aarch64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-aarch64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-aarch64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-aarch64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-aarch64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-aarch64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-aarch64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-aarch64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-aarch64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-aarch64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-aarch64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_mpich
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.1.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.1.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/adios_object.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/constants.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/coordinates_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/fieldgroup.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/fv_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/globalfield.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/griddata.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/operatorstencil.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/options_io.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/paralleltransform.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/petsc_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/petsclib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/physicsmodel.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/rajalib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/rkscheme.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/scorepwrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/slepclib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/solver.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/surfaceiter.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/expressionparser.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/gettext.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/range.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/timer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/type_name.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/uncopyable.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/sys/variant.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/template_combinations.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/traits.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/vectormetric.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/where.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/where.hxx
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/version.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/revision.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-aarch64/bout++/bout/build_defines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-add-mod-path
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-archive-helper.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-boutdata-restart-create
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-build-deps.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-changelog-generator.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-log-color
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-sonnet
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-stop-script
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-factory-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-format-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-header-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-macro-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout_3to4.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout_4to5
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-config
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutconfig/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/bout++
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_mpich/manual
-- Install configuration: "RelWithDebInfo"
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++/
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/basic.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/documentation_options.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/language_data.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/minus.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/plus.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/searchtools.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/contents.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinxdoc.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css/custom.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/index.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/adios2.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//api_reference.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/code_layout.html
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-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/laplacian.html
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//genindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//search.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/layout1.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/layout2.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/memory.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/diffStencils.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/topology_schematic.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/grid_gen.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/elliptic_grid.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/poincare.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//objects.inv
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT libbout
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.2.0.dev574+ge3f21cd2f-1.fc42 --unique-debug-suffix -5.2.0.dev574+ge3f21cd2f-1.fc42.aarch64 --unique-debug-src-base bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutconfig/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutconfig/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
Scanned 170 directories and 882 files,
               processed 54 inodes,
               4 modified (0 replaced + 4 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.2ri8Kq
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ for mpi in openmpi mpich
+ fail=1
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-aarch64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-aarch64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64
+ eval 'MPI_COMPILER=openmpi-aarch64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-aarch64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-aarch64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-aarch64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-aarch64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-aarch64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-aarch64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
++ MPI_COMPILER=openmpi-aarch64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-aarch64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-aarch64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-aarch64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-aarch64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ pushd build_openmpi
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ sed 's/ 3s / 30s /' -i tests/integrated/test-coordinates-initialization/runtest
+ make build-check-integrated-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 build-check-integrated-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 55
make  -f CMakeFiles/Makefile2 CMakeFiles/build-check-integrated-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  1%] Built target pvpre
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  5%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target bout++
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
[ 60%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown-weights.dir/link.d "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 60%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp.cpython-313-aarch64-linux-gnu
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace/boutexcept.cxx
[ 65%] Linking CXX executable boutexcept
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-backtrace.dir/link.d "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler/test_beuler.cxx
[ 65%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_beuler.dir/link.d CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
[ 65%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-bout-override-default-option.dir/link.d "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args/command-args.cxx
[ 67%] Linking CXX executable command-args
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-command-args.dir/link.d "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications/test-communications.cxx
[ 67%] Linking CXX executable test-communications
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-communications.dir/link.d "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
[ 69%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-coordinates-initialization.dir/link.d "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-coordinates-initialization
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic/test_cyclic.cxx
[ 69%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-cyclic.dir/link.d "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-cyclic
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2/test_delp2.cxx
[ 70%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-delp2.dir/link.d "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 70%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-datafile-facade.dir/link.d "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability.dir/link.d "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability-staggered.dir/link.d "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 74%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-fieldgroupComm.dir/link.d "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata.dir/link.d "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata-yboundary-guards.dir/link.d "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro/test_gyro.cxx
[ 76%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-gyro.dir/link.d "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial/test_initial.cxx
[ 76%] Linking CXX executable test_initial
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-initial.dir/link.d "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability/2fluid.cxx
[ 78%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interchange-instability.dir/link.d "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interchange-instability
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate/test_interpolate.cxx
[ 78%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate.dir/link.d "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 80%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate-z.dir/link.d "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19:   required from here
   51 |     mySolver.setup();
      |     ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
[ 80%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invertable-operator.dir/link.d "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar/test_invpar.cxx
[ 81%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invpar.dir/link.d "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace/test_laplace.cxx
[ 81%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace.dir/link.d "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 83%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace-petsc3d.dir/link.d "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
[ 83%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-fv.dir/link.d "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 85%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-short.dir/link.d "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz/test-laplacexz.cxx
[ 85%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexz.dir/link.d "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 87%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-multigrid-laplace.dir/link.d "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
[ 87%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-naulin-laplace.dir/link.d "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 89%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-options-netcdf.dir/link.d "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
[ 89%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace.dir/link.d "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 89%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.d "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io/test-restart-io.cxx
[ 90%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restart-io.dir/link.d "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting/test_restarting.cxx
[ 90%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restarting.dir/link.d "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth/test_smooth.cxx
[ 92%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-smooth.dir/link.d "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-smooth
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb/test_snb.cxx
[ 92%] Linking CXX executable test_snb
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-snb.dir/link.d "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-snb
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver/test_solver.cxx
[ 94%] Linking CXX executable test_solver
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-solver.dir/link.d "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-solver
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash/squash.cxx
[ 94%] Linking CXX executable squash
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-squash.dir/link.d "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-squash
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck.dir/link.d "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck-file.dir/link.d "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift.dir/link.d "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift-staggered.dir/link.d "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift-staggered
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec/testVec.cxx
[100%] Linking CXX executable testVec
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-vec.dir/link.d "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown/test_yupdown.cxx
[100%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown.dir/link.d "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-yupdown
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-integrated-tests
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
+ for dir in simple-model legacy-model
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-boutpp/simple-model ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ pushd tests/integrated/test-boutpp/simple-model
+ cat
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16563)]
[New Thread 0xffffe497f180 (LWP 16564)]
[Thread 0xffffe497f180 (LWP 16564) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16561

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd2e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabd0160, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabd0160, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221b20, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5c00, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5c00, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5c00, sunctx_out=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b418, comm=0xaaaaab1f5c00) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221b20, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221b20, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5c00, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5c00, sunctx_out=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b418, comm=0xaaaaab1f5c00) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221b20, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221b20, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5c00, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5c00, sunctx_out=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b418, comm=0xaaaaab1f5c00) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5c00, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5c00, sunctx_out=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b418, comm=0xaaaaab1f5c00) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5c00, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5c00, sunctx_out=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b418, comm=0xaaaaab1f5c00) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabd0900, __args#0=0xaaaaab1fe6d0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217970) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 88dd8795-df14-44ec-8996-a0db2561957e

Run started at  : Thu Dec 12 13:17:48 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.03e-02     0.0    0.0    0.3  150.8  -51.2
1.000e-01        253       3.17e-02    14.8    0.0    0.0   58.2   27.0
2.000e-01        152       2.47e-02    11.6    0.0    0.0   54.4   34.0
3.000e-01        150       2.44e-02    11.6    0.0    0.0   54.7   33.7
4.000e-01        155       2.46e-02    11.8    0.0    0.0   54.5   33.7
5.000e-01        139       2.46e-02    10.7    0.0    0.0   55.7   33.6
6.000e-01        124       2.41e-02     9.7    0.0    0.0   56.2   34.0
7.000e-01        130       2.46e-02    10.0    0.0    0.0   56.2   33.8
8.000e-01        163       2.52e-02    12.1    0.0    0.0   54.5   33.4
9.000e-01        142       2.54e-02    10.6    0.0    0.0   56.7   32.7
1.000e+00        176       2.55e-02    13.0    0.0    0.0   54.5   32.5
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:17:48 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221b20, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221310) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16563) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16561) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16565

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 05b1d63f-9de6-4a80-9c2e-27f6a18e8e2b

Run started at  : Thu Dec 12 13:17:50 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.12e-02    -0.0    0.0    0.4  149.7  -50.0
1.000e-01        253       3.30e-02    14.3    0.0    0.0   58.7   27.0
2.000e-01        152       2.51e-02    11.4    0.0    0.0   55.6   33.0
3.000e-01        150       2.52e-02    11.3    0.0    0.0   55.8   32.9
4.000e-01        155       2.49e-02    11.7    0.0    0.0   55.9   32.4
5.000e-01        139       2.50e-02    10.4    0.0    0.0   56.5   33.0
6.000e-01        124       2.49e-02     9.4    0.0    0.0   57.5   33.1
7.000e-01        130       2.52e-02     9.7    0.0    0.0   57.3   33.0
8.000e-01        163       2.66e-02    11.5    0.0    0.0   55.8   32.6
9.000e-01        142       2.56e-02    10.4    0.0    0.0   56.7   32.9
1.000e+00        176       2.65e-02    12.5    0.0    0.0   55.6   31.9
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:17:50 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16576)]
[New Thread 0xffffe497f180 (LWP 16577)]
[Thread 0xffffe497f180 (LWP 16577) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16574

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 1f974f86-f7ed-4835-8de3-3188985c3a43

Run started at  : Thu Dec 12 13:18:04 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.05e-02     0.0    0.0    0.4  149.3  -49.7
1.000e-01        253       3.18e-02    14.7    0.0    0.0   57.8   27.5
2.000e-01        152       2.43e-02    11.8    0.0    0.0   53.7   34.5
3.000e-01        150       2.41e-02    11.6    0.0    0.0   54.7   33.7
4.000e-01        155       2.42e-02    12.1    0.0    0.0   54.7   33.2
5.000e-01        139       2.44e-02    10.8    0.0    0.0   55.7   33.5
6.000e-01        124       2.44e-02     9.7    0.0    0.0   56.1   34.2
7.000e-01        130       2.46e-02    10.0    0.0    0.0   56.5   33.5
8.000e-01        163       2.54e-02    12.2    0.0    0.0   54.9   33.0
9.000e-01        142       2.50e-02    10.8    0.0    0.0   56.0   33.2
1.000e+00        176       2.58e-02    12.8    0.0    0.0   54.0   33.1
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:04 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16576) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16574) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16578

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: e9951b8f-18cd-4cb6-90eb-1094f09cfc22

Run started at  : Thu Dec 12 13:18:05 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.07e-02     0.0    0.0    0.4  149.8  -50.2
1.000e-01        253       3.21e-02    14.6    0.0    0.0   57.9   27.4
2.000e-01        152       2.47e-02    11.5    0.0    0.0   54.9   33.6
3.000e-01        150       2.46e-02    11.6    0.0    0.0   54.9   33.6
4.000e-01        155       2.49e-02    11.7    0.0    0.0   55.2   33.1
5.000e-01        139       2.48e-02    10.6    0.0    0.0   56.1   33.4
6.000e-01        124       2.43e-02     9.7    0.0    0.0   56.9   33.4
7.000e-01        130       2.41e-02    10.1    0.0    0.0   57.4   32.5
8.000e-01        163       2.55e-02    12.0    0.0    0.0   55.4   32.6
9.000e-01        142       2.49e-02    10.8    0.0    0.0   56.0   33.2
1.000e+00        176       2.59e-02    12.6    0.0    0.0   54.9   32.4
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:06 2024
Run time : 1 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16589)]
[New Thread 0xffffe497f180 (LWP 16590)]
[Thread 0xffffe497f180 (LWP 16590) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16587

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 94cef109-8f80-471f-bec8-89b161844739

Run started at  : Thu Dec 12 13:18:19 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.01e-02    -0.1    0.0    0.4  149.4  -49.8
1.000e-01        253       3.17e-02    14.9    0.0    0.0   57.6   27.5
2.000e-01        152       2.42e-02    11.9    0.0    0.0   54.5   33.6
3.000e-01        150       2.42e-02    11.7    0.0    0.0   54.3   34.0
4.000e-01        155       2.44e-02    11.9    0.0    0.0   54.2   33.9
5.000e-01        139       2.42e-02    10.8    0.0    0.0   55.3   33.9
6.000e-01        124       2.43e-02     9.7    0.0    0.0   56.3   34.0
7.000e-01        130       2.43e-02    10.1    0.0    0.0   55.9   34.0
8.000e-01        163       2.47e-02    12.4    0.0    0.0   54.2   33.5
9.000e-01        142       2.46e-02    10.8    0.0    0.0   55.0   34.1
1.000e+00        176       2.55e-02    12.9    0.0    0.0   54.0   33.1
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:19 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16589) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16587) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16591

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: dd0e726f-908e-498f-8a5a-18a14c0fd0ef

Run started at  : Thu Dec 12 13:18:21 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.11e-02     0.1    0.0    0.3  148.8  -49.2
1.000e-01        253       3.26e-02    14.4    0.0    0.0   58.1   27.4
2.000e-01        152       2.45e-02    11.6    0.0    0.0   54.1   34.3
3.000e-01        150       2.48e-02    11.3    0.0    0.0   55.2   33.5
4.000e-01        155       2.52e-02    11.6    0.0    0.0   55.0   33.4
5.000e-01        139       2.49e-02    10.5    0.0    0.0   55.5   34.0
6.000e-01        124       2.48e-02     9.5    0.0    0.0   56.6   33.9
7.000e-01        130       2.48e-02     9.9    0.0    0.0   56.5   33.6
8.000e-01        163       2.57e-02    11.9    0.0    0.0   54.8   33.3
9.000e-01        142       2.52e-02    10.7    0.0    0.0   56.1   33.2
1.000e+00        176       2.61e-02    12.7    0.0    0.0   54.7   32.6
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:21 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16602)]
[New Thread 0xffffe497f180 (LWP 16603)]
[Thread 0xffffe497f180 (LWP 16603) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16600

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: a92b1411-4762-4b38-8fc8-1b4b350d6c4a

Run started at  : Thu Dec 12 13:18:35 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.03e-02    -0.0    0.0    0.4  149.3  -49.7
1.000e-01        253       3.19e-02    14.8    0.0    0.0   57.8   27.4
2.000e-01        152       2.43e-02    11.7    0.0    0.0   54.5   33.7
3.000e-01        150       2.41e-02    11.7    0.0    0.0   55.3   33.0
4.000e-01        155       2.44e-02    11.9    0.0    0.0   54.6   33.5
5.000e-01        139       2.44e-02    10.8    0.0    0.0   55.5   33.7
6.000e-01        124       2.41e-02     9.7    0.0    0.0   56.2   34.1
7.000e-01        130       2.43e-02    10.2    0.0    0.0   56.0   33.8
8.000e-01        163       2.50e-02    12.2    0.0    0.0   55.6   32.3
9.000e-01        142       2.49e-02    10.8    0.0    0.0   55.7   33.5
1.000e+00        176       2.58e-02    12.8    0.0    0.0   54.2   33.1
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:35 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16602) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16600) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16604

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: edbfabe2-5100-4357-b597-5ab017866973

Run started at  : Thu Dec 12 13:18:37 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.1    0.0    0.4  149.1  -49.5
1.000e-01        253       3.17e-02    14.8    0.0    0.0   57.8   27.4
2.000e-01        152       2.43e-02    11.6    0.0    0.0   54.9   33.5
3.000e-01        150       2.44e-02    11.5    0.0    0.0   55.5   33.0
4.000e-01        155       2.43e-02    12.0    0.0    0.0   55.1   33.0
5.000e-01        139       2.43e-02    10.8    0.0    0.0   55.5   33.7
6.000e-01        124       2.41e-02     9.7    0.0    0.0   56.5   33.8
7.000e-01        130       2.39e-02    10.2    0.0    0.0   56.4   33.4
8.000e-01        163       2.47e-02    12.4    0.0    0.0   55.1   32.5
9.000e-01        142       2.47e-02    10.8    0.0    0.0   55.9   33.3
1.000e+00        176       2.58e-02    12.6    0.0    0.0   54.7   32.7
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:37 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16615)]
[New Thread 0xffffe497f180 (LWP 16616)]
[Thread 0xffffe497f180 (LWP 16616) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16613

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 9986da4d-334d-43b2-9f51-13f3df3691ff

Run started at  : Thu Dec 12 13:18:50 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.03e-02     0.0    0.0    0.4  148.9  -49.3
1.000e-01        253       3.16e-02    14.8    0.0    0.0   57.5   27.7
2.000e-01        152       2.39e-02    11.9    0.0    0.0   54.7   33.4
3.000e-01        150       2.42e-02    11.7    0.0    0.0   54.4   33.9
4.000e-01        155       2.44e-02    11.9    0.0    0.0   54.4   33.7
5.000e-01        139       2.44e-02    10.7    0.0    0.0   55.1   34.2
6.000e-01        124       2.39e-02     9.8    0.0    0.0   56.0   34.2
7.000e-01        130       2.40e-02    10.2    0.0    0.0   55.5   34.3
8.000e-01        163       2.47e-02    12.3    0.0    0.0   54.5   33.2
9.000e-01        142       2.45e-02    10.9    0.0    0.0   54.9   34.2
1.000e+00        176       2.55e-02    12.9    0.0    0.0   54.3   32.9
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:51 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16615) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16613) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16617

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: ee9d669d-d680-40b5-ae02-d642eb808c9c

Run started at  : Thu Dec 12 13:18:52 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.0    0.0    0.3  149.1  -49.5
1.000e-01        253       3.22e-02    14.6    0.0    0.0   57.9   27.5
2.000e-01        152       2.47e-02    11.6    0.0    0.0   54.6   33.8
3.000e-01        150       2.46e-02    11.5    0.0    0.0   54.4   34.2
4.000e-01        155       2.52e-02    11.5    0.0    0.0   55.4   33.0
5.000e-01        139       2.49e-02    10.7    0.0    0.0   55.8   33.5
6.000e-01        124       2.44e-02     9.6    0.0    0.0   56.4   33.9
7.000e-01        130       2.42e-02    10.2    0.0    0.0   56.6   33.2
8.000e-01        163       2.57e-02    11.9    0.0    0.0   55.2   32.9
9.000e-01        142       2.52e-02    10.7    0.0    0.0   56.4   32.9
1.000e+00        176       2.61e-02    12.7    0.0    0.0   55.2   32.1
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:18:52 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16628)]
[New Thread 0xffffe497f180 (LWP 16629)]
[Thread 0xffffe497f180 (LWP 16629) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16626

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 64253151-c5f8-498b-8fa7-8f79cb711393

Run started at  : Thu Dec 12 13:19:06 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.02e-02    -0.0    0.0    0.4  149.3  -49.7
1.000e-01        253       3.21e-02    14.8    0.0    0.0   57.8   27.4
2.000e-01        152       2.43e-02    11.7    0.0    0.0   54.3   34.0
3.000e-01        150       2.44e-02    11.6    0.0    0.0   55.3   33.1
4.000e-01        155       2.48e-02    11.7    0.0    0.0   54.5   33.7
5.000e-01        139       2.46e-02    10.6    0.0    0.0   55.3   34.0
6.000e-01        124       2.37e-02     9.8    0.0    0.0   56.4   33.7
7.000e-01        130       2.40e-02    10.3    0.0    0.0   56.6   33.1
8.000e-01        163       2.52e-02    12.1    0.0    0.0   55.0   32.9
9.000e-01        142       2.52e-02    10.7    0.0    0.0   55.5   33.7
1.000e+00        176       2.56e-02    12.9    0.0    0.0   54.2   32.9
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:06 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16628) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16626) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16630

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 38192ce3-6ee7-4772-b754-de594bb9fb8c

Run started at  : Thu Dec 12 13:19:08 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.0    0.0    0.3  149.1  -49.5
1.000e-01        253       3.20e-02    14.7    0.0    0.0   58.2   27.1
2.000e-01        152       2.44e-02    11.7    0.0    0.0   55.1   33.3
3.000e-01        150       2.41e-02    11.7    0.0    0.0   55.2   33.1
4.000e-01        155       2.49e-02    11.7    0.0    0.0   55.4   32.9
5.000e-01        139       2.48e-02    10.6    0.0    0.0   55.9   33.6
6.000e-01        124       2.42e-02     9.6    0.0    0.0   57.0   33.4
7.000e-01        130       2.43e-02    10.0    0.0    0.0   56.5   33.5
8.000e-01        163       2.57e-02    11.9    0.0    0.0   55.2   32.8
9.000e-01        142       2.53e-02    10.6    0.0    0.0   55.9   33.5
1.000e+00        176       2.60e-02    12.7    0.0    0.0   55.2   32.1
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:08 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16641)]
[New Thread 0xffffe497f180 (LWP 16642)]
[Thread 0xffffe497f180 (LWP 16642) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16639

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 4f6409a4-1389-4ee7-9a47-513f5c7d0bbf

Run started at  : Thu Dec 12 13:19:22 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.07e-02     0.0    0.0    0.4  148.7  -49.1
1.000e-01        253       3.19e-02    14.8    0.0    0.0   57.6   27.7
2.000e-01        152       2.47e-02    11.4    0.0    0.0   54.6   34.0
3.000e-01        150       2.41e-02    11.8    0.0    0.0   54.8   33.4
4.000e-01        155       2.46e-02    11.8    0.0    0.0   54.5   33.7
5.000e-01        139       2.45e-02    10.8    0.0    0.0   55.4   33.8
6.000e-01        124       2.43e-02     9.7    0.0    0.0   55.7   34.6
7.000e-01        130       2.40e-02    10.3    0.0    0.0   56.0   33.6
8.000e-01        163       2.53e-02    12.1    0.0    0.0   54.6   33.2
9.000e-01        142       2.49e-02    10.8    0.0    0.0   55.3   33.9
1.000e+00        176       2.59e-02    12.8    0.0    0.0   54.4   32.8
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:22 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16641) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16639) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16643

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 8f50a6a5-8ce0-4190-8bd1-6b5d398e8439

Run started at  : Thu Dec 12 13:19:23 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.08e-02     0.1    0.0    0.4  148.7  -49.1
1.000e-01        253       3.26e-02    14.4    0.0    0.0   58.4   27.2
2.000e-01        152       2.46e-02    11.5    0.0    0.0   55.4   33.1
3.000e-01        150       2.46e-02    11.6    0.0    0.0   55.2   33.2
4.000e-01        155       2.49e-02    11.7    0.0    0.0   56.0   32.4
5.000e-01        139       2.49e-02    10.5    0.0    0.0   56.5   33.0
6.000e-01        124       2.49e-02     9.4    0.0    0.0   56.9   33.7
7.000e-01        130       2.49e-02     9.8    0.0    0.0   56.8   33.3
8.000e-01        163       2.56e-02    11.9    0.0    0.0   55.2   32.9
9.000e-01        142       2.54e-02    10.4    0.0    0.0   56.2   33.4
1.000e+00        176       2.59e-02    12.7    0.0    0.0   55.9   31.4
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:24 2024
Run time : 1 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16654)]
[New Thread 0xffffe497f180 (LWP 16655)]
[Thread 0xffffe497f180 (LWP 16655) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16652

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: d89722ad-7d29-4b9c-9094-94a58da8ed8b

Run started at  : Thu Dec 12 13:19:37 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.02e-02     0.0    0.0    0.4  149.4  -49.7
1.000e-01        253       3.20e-02    14.7    0.0    0.0   57.9   27.4
2.000e-01        152       2.43e-02    11.8    0.0    0.0   54.3   33.9
3.000e-01        150       2.37e-02    11.8    0.0    0.0   54.6   33.6
4.000e-01        155       2.38e-02    12.2    0.0    0.0   54.9   32.9
5.000e-01        139       2.43e-02    10.8    0.0    0.0   55.6   33.6
6.000e-01        124       2.36e-02    10.0    0.0    0.0   56.4   33.6
7.000e-01        130       2.41e-02    10.2    0.0    0.0   56.0   33.8
8.000e-01        163       2.52e-02    12.2    0.0    0.0   54.5   33.4
9.000e-01        142       2.47e-02    10.9    0.0    0.0   55.9   33.3
1.000e+00        176       2.59e-02    12.8    0.0    0.0   54.3   32.9
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:38 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16654) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16652) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16656

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 45a4147a-2643-4d55-8ed4-225203fe9047

Run started at  : Thu Dec 12 13:19:39 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.03e-02     0.0    0.0    0.4  150.5  -51.0
1.000e-01        253       3.19e-02    14.8    0.0    0.0   57.9   27.3
2.000e-01        152       2.45e-02    11.6    0.0    0.0   54.2   34.3
3.000e-01        150       2.46e-02    11.5    0.0    0.0   55.0   33.5
4.000e-01        155       2.50e-02    11.7    0.0    0.0   54.6   33.7
5.000e-01        139       2.43e-02    10.8    0.0    0.0   55.2   34.1
6.000e-01        124       2.42e-02     9.7    0.0    0.0   56.4   33.9
7.000e-01        130       2.39e-02    10.2    0.0    0.0   56.4   33.4
8.000e-01        163       2.54e-02    12.1    0.0    0.0   54.9   33.0
9.000e-01        142       2.52e-02    10.6    0.0    0.0   56.2   33.1
1.000e+00        176       2.59e-02    12.7    0.0    0.0   54.8   32.5
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:39 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16667)]
[New Thread 0xffffe497f180 (LWP 16668)]
[Thread 0xffffe497f180 (LWP 16668) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16665

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: f73d69c1-5d28-44c0-8a88-5a036a79c142

Run started at  : Thu Dec 12 13:19:53 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.08e-02     0.0    0.0    0.4  148.7  -49.1
1.000e-01        253       3.26e-02    14.5    0.0    0.0   57.7   27.9
2.000e-01        152       2.45e-02    11.7    0.0    0.0   54.4   33.9
3.000e-01        150       2.45e-02    11.6    0.0    0.0   54.5   33.9
4.000e-01        155       2.46e-02    11.7    0.0    0.0   54.4   33.9
5.000e-01        139       2.43e-02    10.8    0.0    0.0   54.7   34.5
6.000e-01        124       2.41e-02     9.7    0.0    0.0   56.0   34.3
7.000e-01        130       2.44e-02    10.2    0.0    0.0   55.4   34.4
8.000e-01        163       2.51e-02    12.2    0.0    0.0   53.6   34.2
9.000e-01        142       2.49e-02    10.8    0.0    0.0   56.0   33.2
1.000e+00        176       2.60e-02    12.6    0.0    0.0   54.4   33.0
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:53 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16667) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16665) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16669

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 0957ad5f-30d1-4c9b-a57f-ccacf7838f38

Run started at  : Thu Dec 12 13:19:55 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.0    0.0    0.4  149.7  -50.1
1.000e-01        253       3.23e-02    14.6    0.0    0.0   57.9   27.5
2.000e-01        152       2.46e-02    11.6    0.0    0.0   54.4   33.9
3.000e-01        150       2.46e-02    11.6    0.0    0.0   54.6   33.7
4.000e-01        155       2.49e-02    11.7    0.0    0.0   54.9   33.4
5.000e-01        139       2.48e-02    10.7    0.0    0.0   55.0   34.3
6.000e-01        124       2.46e-02     9.5    0.0    0.0   55.9   34.6
7.000e-01        130       2.50e-02     9.8    0.0    0.0   55.8   34.3
8.000e-01        163       2.54e-02    12.1    0.0    0.0   55.1   32.9
9.000e-01        142       2.53e-02    10.6    0.0    0.0   55.7   33.6
1.000e+00        176       2.61e-02    12.7    0.0    0.0   53.9   33.4
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:19:55 2024
Run time : 0 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16680)]
[New Thread 0xffffe497f180 (LWP 16681)]
[Thread 0xffffe497f180 (LWP 16681) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16678

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1fd3b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 3, argv=@0xffffffffdaa8: 0xaaaaaaac1690) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabaf840, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#16 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#17 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#18 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#29 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f5cd0, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd660) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab221bf0, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab221bf0, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#20 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#21 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#22 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#33 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f5cd0, logger_out=logger_out@entry=0xffffffffd6c8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f5cd0, sunctx_out=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21b4e8, comm=0xaaaaab1f5cd0) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc1ff0, __args#0=0xaaaaab1fe7a0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f4660 [PAC] in PythonModel::pyinit (this=0xaaaaab217a40) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53806
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53760
#19 0x0000fffff73f2e34 [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55754
#20 __pyx_pw_9libboutpp_12PhysicsModel_1solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55199
#21 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#32 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 562dc7e8-73e3-4cd3-b158-98ab5f162457

Run started at  : Thu Dec 12 13:20:09 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.05e-02    -0.0    0.0    0.4  148.8  -49.1
1.000e-01        253       3.22e-02    14.7    0.0    0.0   57.7   27.6
2.000e-01        152       2.44e-02    11.7    0.0    0.0   54.4   33.9
3.000e-01        150       2.46e-02    11.5    0.0    0.0   55.3   33.2
4.000e-01        155       2.49e-02    11.7    0.0    0.0   54.5   33.7
5.000e-01        139       2.47e-02    10.7    0.0    0.0   55.0   34.3
6.000e-01        124       2.44e-02     9.6    0.0    0.0   56.1   34.3
7.000e-01        130       2.41e-02    10.2    0.0    0.0   55.6   34.1
8.000e-01        163       2.56e-02    12.0    0.0    0.0   55.1   32.9
9.000e-01        142       2.50e-02    10.7    0.0    0.0   55.4   33.9
1.000e+00        176       2.59e-02    12.7    0.0    0.0   54.8   32.6
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:20:09 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab221bf0, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab2213e0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff76cb5c0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff73f3a8c [PAC] in __pyx_pf_9libboutpp_12PhysicsModel_8_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=0xfffff76cb5c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56452
#14 __pyx_pw_9libboutpp_12PhysicsModel_9_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56387
#15 0x0000fffff73f6710 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57475
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#17 0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#22 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16680) exited]
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 16678) exited normally]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16682

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = mini (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = mini (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = mini (Command line)
	Option stopCheckName = BOUT.stop (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: d6cbadbe-91bb-43a1-a80b-ebba2c22811e

Run started at  : Thu Dec 12 13:20:10 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.08e-02     0.0    0.0    0.3  149.8  -50.2
1.000e-01        253       3.27e-02    14.5    0.0    0.0   57.6   27.9
2.000e-01        152       2.48e-02    11.5    0.0    0.0   54.8   33.7
3.000e-01        150       2.48e-02    11.4    0.0    0.0   54.6   34.0
4.000e-01        155       2.54e-02    11.5    0.0    0.0   54.7   33.8
5.000e-01        139       2.49e-02    10.6    0.0    0.0   55.5   34.0
6.000e-01        124       2.42e-02     9.8    0.0    0.0   56.8   33.4
7.000e-01        130       2.49e-02     9.9    0.0    0.0   56.5   33.6
8.000e-01        163       2.53e-02    12.0    0.0    0.0   54.7   33.3
9.000e-01        142       2.48e-02    10.8    0.0    0.0   56.0   33.2
1.000e+00        176       2.58e-02    12.7    0.0    0.0   54.0   33.3
-  Step 10 of 10. Elapsed 0:00:00.3 ETA 0:00:-0.1
Run finished at  : Thu Dec 12 13:20:11 2024
Run time : 1 s
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
+ :
+ popd
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-boutpp/legacy-model ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ for dir in simple-model legacy-model
+ pushd tests/integrated/test-boutpp/legacy-model
+ cat
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16694)]
[New Thread 0xffffe497f180 (LWP 16695)]
[Thread 0xffffe497f180 (LWP 16695) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16692

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588c750, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 8bb08c7d-ba22-46b9-8b67-cd856270a4f7

Run started at  : Thu Dec 12 13:20:24 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.12e-02     0.6    0.0    0.3  144.2  -45.1
1.000e-01         16       2.67e-02     1.9    0.0    0.0   67.9   30.2
2.000e-01          1       2.05e-02     0.7    0.0    0.0   62.6   36.6
3.000e-01          1       2.10e-02     0.7    0.0    0.0   62.2   37.0
4.000e-01          1       2.07e-02     0.8    0.0    0.0   62.3   36.9
5.000e-01          1       2.09e-02     0.7    0.0    0.0   63.1   36.2
6.000e-01          2       2.08e-02     0.9    0.0    0.0   62.4   36.8
7.000e-01          1       2.10e-02     0.8    0.0    0.0   63.0   36.1
8.000e-01          1       2.09e-02     0.8    0.0    0.0   62.8   36.5
9.000e-01          1       2.10e-02     0.7    0.0    0.0   63.0   36.3
1.000e+00          1       2.09e-02     0.8    0.0    0.0   63.2   36.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:25 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16694) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe588c750, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe588c750) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16692] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16692) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16696

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 583747b7-a209-41ec-b2d3-abe3c9ce4eb3

Run started at  : Thu Dec 12 13:20:26 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.10e-02     0.7    0.0    0.3  144.8  -45.8
1.000e-01         16       2.71e-02     1.9    0.0    0.0   68.1   30.0
2.000e-01          1       2.12e-02     0.7    0.0    0.0   62.5   36.7
3.000e-01          1       2.08e-02     0.7    0.0    0.0   62.7   36.6
4.000e-01          1       2.14e-02     0.7    0.0    0.0   63.2   36.1
5.000e-01          1       2.13e-02     0.7    0.0    0.0   63.3   36.0
6.000e-01          2       2.13e-02     0.8    0.0    0.0   63.2   35.9
7.000e-01          1       2.10e-02     0.7    0.0    0.0   64.0   35.3
8.000e-01          1       2.14e-02     0.7    0.0    0.0   64.2   35.1
9.000e-01          1       2.16e-02     0.7    0.0    0.0   64.3   34.9
1.000e+00          1       2.15e-02     0.7    0.0    0.0   64.1   35.2
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:26 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16696] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16707)]
[New Thread 0xffffe497f180 (LWP 16708)]
[Thread 0xffffe497f180 (LWP 16708) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16705

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: bd2ffedd-61b8-4ccb-9964-8154219982f8

Run started at  : Thu Dec 12 13:20:40 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.12e-02     0.5    0.0    0.4  145.0  -45.9
1.000e-01         16       2.70e-02     1.8    0.0    0.0   68.4   29.8
2.000e-01          1       2.10e-02     0.7    0.0    0.0   62.7   36.6
3.000e-01          1       2.12e-02     0.7    0.0    0.0   62.9   36.4
4.000e-01          1       2.13e-02     0.8    0.0    0.0   62.6   36.6
5.000e-01          1       2.10e-02     0.7    0.0    0.0   62.9   36.4
6.000e-01          2       2.11e-02     0.9    0.0    0.0   62.8   36.4
7.000e-01          1       2.10e-02     0.8    0.0    0.0   63.1   36.1
8.000e-01          1       2.13e-02     0.8    0.0    0.0   63.1   36.1
9.000e-01          1       2.10e-02     0.8    0.0    0.0   63.3   35.9
1.000e+00          1       2.07e-02     0.8    0.0    0.0   63.1   36.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:40 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16707) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16705] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16705) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16709

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: dbfd464d-cf06-43b3-b00c-b2665c07b065

Run started at  : Thu Dec 12 13:20:42 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.17e-02     0.6    0.0    0.3  145.1  -46.0
1.000e-01         16       2.80e-02     1.8    0.0    0.0   69.0   29.2
2.000e-01          1       2.18e-02     0.7    0.0    0.0   63.6   35.7
3.000e-01          1       2.18e-02     0.7    0.0    0.0   63.7   35.6
4.000e-01          1       2.19e-02     0.7    0.0    0.0   63.7   35.6
5.000e-01          1       2.21e-02     0.7    0.0    0.0   62.7   36.5
6.000e-01          2       2.23e-02     0.8    0.0    0.0   64.1   35.1
7.000e-01          1       2.23e-02     0.7    0.0    0.0   64.6   34.7
8.000e-01          1       2.17e-02     0.7    0.0    0.0   64.9   34.5
9.000e-01          1       2.20e-02     0.7    0.0    0.0   64.4   34.9
1.000e+00          1       2.22e-02     0.7    0.0    0.0   64.8   34.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:42 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16709] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16720)]
[New Thread 0xffffe497f180 (LWP 16721)]
[Thread 0xffffe497f180 (LWP 16721) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16718

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 4b0195f1-674e-4ea4-bc1c-537d91b7d1ac

Run started at  : Thu Dec 12 13:20:56 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.11e-02     0.6    0.0    0.3  144.1  -45.1
1.000e-01         16       2.64e-02     1.9    0.0    0.0   68.2   29.9
2.000e-01          1       2.07e-02     0.7    0.0    0.0   62.6   36.7
3.000e-01          1       2.07e-02     0.8    0.0    0.0   62.5   36.7
4.000e-01          1       2.09e-02     0.7    0.0    0.0   62.4   36.8
5.000e-01          1       2.09e-02     0.7    0.0    0.0   62.9   36.3
6.000e-01          2       2.09e-02     0.9    0.0    0.0   62.5   36.6
7.000e-01          1       2.10e-02     0.7    0.0    0.0   63.3   36.0
8.000e-01          1       2.11e-02     0.7    0.0    0.0   62.8   36.4
9.000e-01          1       2.11e-02     0.7    0.0    0.0   63.6   35.7
1.000e+00          1       2.07e-02     0.7    0.0    0.0   64.0   35.3
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:56 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16720) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16718] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16718) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16722

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: df2f10a2-ba40-4dba-aadd-d83a9c45b239

Run started at  : Thu Dec 12 13:20:57 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.12e-02     0.6    0.0    0.3  146.0  -47.0
1.000e-01         16       2.74e-02     1.7    0.0    0.0   68.5   29.7
2.000e-01          1       2.16e-02     0.7    0.0    0.0   63.0   36.3
3.000e-01          1       2.16e-02     0.7    0.0    0.0   63.5   35.8
4.000e-01          1       2.14e-02     0.7    0.0    0.0   63.4   35.9
5.000e-01          1       2.13e-02     0.7    0.0    0.0   64.3   35.0
6.000e-01          2       2.12e-02     0.9    0.0    0.0   63.8   35.3
7.000e-01          1       2.13e-02     0.7    0.0    0.0   64.7   34.7
8.000e-01          1       2.17e-02     0.7    0.0    0.0   64.3   35.0
9.000e-01          1       2.15e-02     0.7    0.0    0.0   64.0   35.3
1.000e+00          1       2.20e-02     0.7    0.0    0.0   63.6   35.7
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:20:58 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16722] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16733)]
[New Thread 0xffffe497f180 (LWP 16734)]
[Thread 0xffffe497f180 (LWP 16734) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16731

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5965440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 846df42b-64f5-4be7-bd1d-e9f863b41a68

Run started at  : Thu Dec 12 13:21:11 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.7    0.0    0.3  145.0  -46.0
1.000e-01         16       2.63e-02     2.0    0.0    0.0   68.2   29.8
2.000e-01          1       2.06e-02     0.7    0.0    0.0   62.8   36.5
3.000e-01          1       2.06e-02     0.8    0.0    0.0   63.0   36.2
4.000e-01          1       2.08e-02     0.8    0.0    0.0   62.7   36.5
5.000e-01          1       2.08e-02     0.7    0.0    0.0   63.9   35.4
6.000e-01          2       2.08e-02     0.8    0.0    0.0   62.9   36.3
7.000e-01          1       2.09e-02     0.8    0.0    0.0   63.2   36.0
8.000e-01          1       2.11e-02     0.8    0.0    0.0   63.6   35.6
9.000e-01          1       2.11e-02     0.7    0.0    0.0   63.4   35.9
1.000e+00          1       2.14e-02     0.7    0.0    0.0   63.7   35.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:11 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16733) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe5965440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe5965440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16731] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16731) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16735

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: fe540bfc-d3d5-445b-8cc8-c5647d868796

Run started at  : Thu Dec 12 13:21:13 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.15e-02     0.6    0.0    0.3  144.4  -45.3
1.000e-01         16       2.71e-02     1.9    0.0    0.0   68.6   29.5
2.000e-01          1       2.12e-02     0.7    0.0    0.0   63.1   36.2
3.000e-01          1       2.12e-02     0.7    0.0    0.0   63.5   35.8
4.000e-01          1       2.15e-02     0.8    0.0    0.0   63.3   35.9
5.000e-01          1       2.15e-02     0.7    0.0    0.0   62.9   36.4
6.000e-01          2       2.15e-02     0.8    0.0    0.0   63.8   35.4
7.000e-01          1       2.17e-02     0.7    0.0    0.0   64.2   35.1
8.000e-01          1       2.17e-02     0.7    0.0    0.0   64.2   35.1
9.000e-01          1       2.19e-02     0.8    0.0    0.0   64.0   35.3
1.000e+00          1       2.19e-02     0.7    0.0    0.0   64.3   35.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:13 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16735] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16746)]
[New Thread 0xffffe497f180 (LWP 16747)]
[Thread 0xffffe497f180 (LWP 16747) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16744

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: b0dea0eb-e4c3-46f6-bc9f-801cc7b3051e

Run started at  : Thu Dec 12 13:21:27 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.08e-02     0.7    0.0    0.3  145.2  -46.2
1.000e-01         16       2.70e-02     1.9    0.0    0.0   68.2   29.9
2.000e-01          1       2.08e-02     0.7    0.0    0.0   62.4   36.9
3.000e-01          1       2.08e-02     0.8    0.0    0.0   62.5   36.7
4.000e-01          1       2.06e-02     0.7    0.0    0.0   62.7   36.6
5.000e-01          1       2.04e-02     0.8    0.0    0.0   63.1   36.1
6.000e-01          2       2.06e-02     0.9    0.0    0.0   63.0   36.1
7.000e-01          1       2.08e-02     0.7    0.0    0.0   63.3   36.0
8.000e-01          1       2.07e-02     0.8    0.0    0.0   63.3   35.9
9.000e-01          1       2.08e-02     0.8    0.0    0.0   63.7   35.5
1.000e+00          1       2.12e-02     0.7    0.0    0.0   63.1   36.1
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:27 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16746) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe5e6e460, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe5e6e460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16744] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16744) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16748

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 8ca9f8d6-dad1-4b00-9b1a-5a5fe9f94f69

Run started at  : Thu Dec 12 13:21:28 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.16e-02     0.6    0.0    0.3  145.3  -46.3
1.000e-01         16       2.74e-02     1.7    0.0    0.0   68.6   29.7
2.000e-01          1       2.08e-02     0.7    0.0    0.0   62.6   36.7
3.000e-01          1       2.10e-02     0.8    0.0    0.0   62.9   36.3
4.000e-01          1       2.15e-02     0.7    0.0    0.0   62.8   36.4
5.000e-01          1       2.10e-02     0.8    0.0    0.0   62.8   36.3
6.000e-01          2       2.06e-02     0.8    0.0    0.0   63.5   35.7
7.000e-01          1       2.11e-02     0.7    0.0    0.0   64.0   35.3
8.000e-01          1       2.14e-02     0.7    0.0    0.0   63.2   36.1
9.000e-01          1       2.13e-02     0.7    0.0    0.0   63.5   35.8
1.000e+00          1       2.13e-02     0.7    0.0    0.0   63.0   36.2
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:29 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16748] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16759)]
[New Thread 0xffffe497f180 (LWP 16760)]
[Thread 0xffffe497f180 (LWP 16760) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16757

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe58b5440, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: bfa71c11-60c4-4176-a173-438dff8f01ed

Run started at  : Thu Dec 12 13:21:42 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.09e-02     0.6    0.0    0.4  144.9  -45.8
1.000e-01         16       2.68e-02     2.0    0.0    0.0   67.6   30.5
2.000e-01          1       2.05e-02     0.8    0.0    0.0   61.6   37.6
3.000e-01          1       2.04e-02     0.8    0.0    0.0   62.3   36.9
4.000e-01          1       2.09e-02     0.7    0.0    0.0   62.7   36.6
5.000e-01          1       2.08e-02     0.7    0.0    0.0   63.3   36.0
6.000e-01          2       2.09e-02     0.9    0.0    0.0   62.6   36.5
7.000e-01          1       2.06e-02     0.7    0.0    0.0   62.7   36.6
8.000e-01          1       2.07e-02     0.7    0.0    0.0   62.7   36.6
9.000e-01          1       2.07e-02     0.7    0.0    0.0   63.7   35.6
1.000e+00          1       2.11e-02     0.7    0.0    0.0   63.3   36.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:42 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16759) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe58b5440, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe58b5440) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16757] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16757) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16761

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 408f439a-daed-46ab-8e83-5e777218deba

Run started at  : Thu Dec 12 13:21:44 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.14e-02     0.6    0.0    0.3  145.0  -46.0
1.000e-01         16       2.72e-02     1.8    0.0    0.0   68.9   29.4
2.000e-01          1       2.14e-02     0.7    0.0    0.0   63.2   36.1
3.000e-01          1       2.11e-02     0.7    0.0    0.0   63.4   35.8
4.000e-01          1       2.09e-02     0.7    0.0    0.0   63.6   35.7
5.000e-01          1       2.11e-02     0.7    0.0    0.0   64.0   35.3
6.000e-01          2       2.18e-02     0.8    0.0    0.0   63.4   35.8
7.000e-01          1       2.15e-02     0.7    0.0    0.0   63.5   35.8
8.000e-01          1       2.16e-02     0.7    0.0    0.0   63.7   35.6
9.000e-01          1       2.16e-02     0.7    0.0    0.0   63.9   35.4
1.000e+00          1       2.21e-02     0.7    0.0    0.0   63.8   35.5
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:44 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16761] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16772)]
[New Thread 0xffffe497f180 (LWP 16773)]
[Thread 0xffffe497f180 (LWP 16773) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16770

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 029350e5-7f30-4e66-8813-08d88ebc7bfa

Run started at  : Thu Dec 12 13:21:58 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.07e-02     0.8    0.0    0.3  145.2  -46.3
1.000e-01         16       2.64e-02     1.9    0.0    0.0   68.4   29.7
2.000e-01          1       2.05e-02     0.7    0.0    0.0   62.2   37.0
3.000e-01          1       2.07e-02     0.7    0.0    0.0   62.6   36.6
4.000e-01          1       2.06e-02     0.7    0.0    0.0   62.5   36.8
5.000e-01          1       2.07e-02     0.8    0.0    0.0   62.9   36.3
6.000e-01          2       2.06e-02     0.9    0.0    0.0   62.7   36.4
7.000e-01          1       2.09e-02     0.7    0.0    0.0   63.0   36.2
8.000e-01          1       2.08e-02     0.8    0.0    0.0   63.0   36.2
9.000e-01          1       2.13e-02     0.9    0.0    0.0   63.2   36.0
1.000e+00          1       2.14e-02     0.7    0.0    0.0   63.0   36.3
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:21:58 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16772) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16770] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16770) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16774

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 0a55c7ed-3a9d-46ab-a5cb-c8a46411cab7

Run started at  : Thu Dec 12 13:21:59 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.13e-02     0.7    0.0    0.3  144.4  -45.5
1.000e-01         16       2.74e-02     1.9    0.0    0.0   68.5   29.6
2.000e-01          1       2.13e-02     0.7    0.0    0.0   63.2   36.1
3.000e-01          1       2.15e-02     0.7    0.0    0.0   63.8   35.5
4.000e-01          1       2.16e-02     0.7    0.0    0.0   63.8   35.5
5.000e-01          1       2.17e-02     0.8    0.0    0.0   63.7   35.5
6.000e-01          2       2.22e-02     0.9    0.0    0.0   63.9   35.1
7.000e-01          1       2.17e-02     0.7    0.0    0.0   63.9   35.4
8.000e-01          1       2.21e-02     0.7    0.0    0.0   64.6   34.7
9.000e-01          1       2.21e-02     0.8    0.0    0.0   64.3   35.0
1.000e+00          1       2.19e-02     0.7    0.0    0.0   64.0   35.3
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:00 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16774] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16785)]
[New Thread 0xffffe497f180 (LWP 16786)]
[Thread 0xffffe497f180 (LWP 16786) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16783

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe588cd20, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 0ed414b5-7245-47d6-9fb1-ed11e5f562f5

Run started at  : Thu Dec 12 13:22:13 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.08e-02     0.7    0.0    0.3  145.2  -46.1
1.000e-01         16       2.71e-02     1.7    0.0    0.0   68.2   30.0
2.000e-01          1       2.08e-02     0.7    0.0    0.0   62.9   36.4
3.000e-01          1       2.08e-02     0.7    0.0    0.0   63.0   36.3
4.000e-01          1       2.07e-02     0.7    0.0    0.0   63.7   35.6
5.000e-01          1       2.08e-02     0.7    0.0    0.0   63.5   35.8
6.000e-01          2       2.12e-02     0.8    0.0    0.0   63.1   36.1
7.000e-01          1       2.10e-02     0.7    0.0    0.0   63.7   35.6
8.000e-01          1       2.13e-02     0.8    0.0    0.0   63.1   36.1
9.000e-01          1       2.12e-02     0.8    0.0    0.0   63.4   35.8
1.000e+00          1       2.12e-02     0.7    0.0    0.0   63.6   35.7
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:13 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16785) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe588cd20, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe588cd20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16783] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16783) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16787

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 6775c67c-e124-4678-9017-6c6e30e8e20c

Run started at  : Thu Dec 12 13:22:15 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.12e-02     0.7    0.0    0.3  144.9  -45.9
1.000e-01         16       2.66e-02     1.8    0.0    0.0   67.9   30.3
2.000e-01          1       2.08e-02     0.7    0.0    0.0   62.3   36.9
3.000e-01          1       2.11e-02     0.7    0.0    0.0   62.6   36.7
4.000e-01          1       2.10e-02     0.7    0.0    0.0   63.0   36.2
5.000e-01          1       2.08e-02     0.8    0.0    0.0   62.9   36.3
6.000e-01          2       2.11e-02     0.8    0.0    0.0   63.0   36.1
7.000e-01          1       2.12e-02     0.7    0.0    0.0   63.1   36.2
8.000e-01          1       2.13e-02     0.7    0.0    0.0   63.4   35.9
9.000e-01          1       2.12e-02     0.7    0.0    0.0   63.8   35.5
1.000e+00          1       2.14e-02     0.8    0.0    0.0   63.6   35.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:15 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16787] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16798)]
[New Thread 0xffffe497f180 (LWP 16799)]
[Thread 0xffffe497f180 (LWP 16799) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16796

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 70a95e18-5b3b-4e1a-8073-a01d533a666d

Run started at  : Thu Dec 12 13:22:29 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.06e-02     0.6    0.0    0.3  144.6  -45.5
1.000e-01         16       2.66e-02     1.8    0.0    0.0   68.7   29.5
2.000e-01          1       2.08e-02     0.7    0.0    0.0   62.0   37.3
3.000e-01          1       2.09e-02     0.7    0.0    0.0   62.4   36.8
4.000e-01          1       2.10e-02     0.7    0.0    0.0   62.8   36.5
5.000e-01          1       2.10e-02     0.7    0.0    0.0   62.9   36.4
6.000e-01          2       2.12e-02     0.9    0.0    0.0   62.8   36.3
7.000e-01          1       2.13e-02     0.7    0.0    0.0   63.4   35.9
8.000e-01          1       2.15e-02     0.7    0.0    0.0   63.6   35.7
9.000e-01          1       2.14e-02     0.7    0.0    0.0   63.6   35.7
1.000e+00          1       2.14e-02     0.7    0.0    0.0   63.7   35.5
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:29 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16798) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xffffe5e6c7e0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xffffe5e6c7e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16796] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16796) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16800

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 71b19585-d8d1-4067-bb07-5c006e9cb803

Run started at  : Thu Dec 12 13:22:30 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.20e-02     0.6    0.0    0.3  143.9  -44.9
1.000e-01         16       2.80e-02     1.9    0.0    0.0   68.5   29.6
2.000e-01          1       2.17e-02     0.8    0.0    0.0   63.4   35.8
3.000e-01          1       2.17e-02     0.7    0.0    0.0   63.4   35.9
4.000e-01          1       2.21e-02     0.7    0.0    0.0   63.2   36.1
5.000e-01          1       2.18e-02     0.7    0.0    0.0   63.7   35.6
6.000e-01          2       2.23e-02     0.8    0.0    0.0   63.8   35.4
7.000e-01          1       2.20e-02     0.7    0.0    0.0   64.8   34.5
8.000e-01          1       2.21e-02     0.7    0.0    0.0   64.4   34.9
9.000e-01          1       2.21e-02     0.7    0.0    0.0   63.5   35.8
1.000e+00          1       2.23e-02     0.7    0.0    0.0   64.6   34.7
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:31 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16800] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0xffffe518f180 (LWP 16811)]
[New Thread 0xffffe497f180 (LWP 16812)]
[Thread 0xffffe497f180 (LWP 16812) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fdb8c4 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16809

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff71331fc [PAC] in BoutMesh::load (this=0xaaaaab1feae0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x0000fffff6fdbae8 [PAC] in BoutInitialise (argc=@0xffffffffdad0: 1, argv=@0xffffffffdaa8: 0xaaaaab044370) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x0000fffff73feef0 [PAC] in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0xfffff76dd000) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57055
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56618
#5  0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#10 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#11 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#12 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#13 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#16 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236918 [PAC] in bout::OptionsIOFactory::createOutput (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x0000fffff71be580 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff723dee8 [PAC] in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:650
#3  0x0000fffff723e0ac [PAC] in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x0000fffff723b7f4 [PAC] in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0xaaaaaabb21f0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x0000fffff7236600 [PAC] in bout::OptionsIOFactory::createRestart (this=0xfffff7382400 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x0000fffff71be664 [PAC] in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x0000fffff7426d14 [PAC] in PythonModel::PythonModel (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___cinit__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53643
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__cinit__ (__pyx_kwds=0x0, __pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53582
#15 __pyx_tp_new_9libboutpp_PhysicsModelBase (t=<optimized out>, a=<optimized out>, k=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80052
#16 0x0000fffff7ac6280 [PAC] in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae05e0 [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff71f6444 [PAC] in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x0000fffff71cf590 [PAC] in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#9  0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#16 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#27 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#28 0x0000aaaaaaaa08f0 [PAC] in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a798 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0xaaaaab1f7400, output_rank=0, logger_ptr=logger_ptr@entry=0xffffffffd670) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x0000fffff495b0fc [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a894 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0xaaaaab222610, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x0000fffff495b10c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495a998 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0xaaaaab222610, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x0000fffff495b168 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495ab14 [PAC] in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x0000fffff495b17c [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#13 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#20 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#30 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#31 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#32 0x0000aaaaaaaa08f0 [PAC] in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495aa90 [PAC] in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x0000fffff495b190 [PAC] in SUNLogger_CreateFromEnv (comm=comm@entry=0xaaaaab1f7400, logger_out=logger_out@entry=0xffffffffd6d8) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x0000fffff4956620 [PAC] in SUNContext_Create (comm=0xaaaaab1f7400, sunctx_out=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x0000fffff71cfbcc [PAC] in sundials::Context::Context (this=0xaaaaab21bef8, comm=0xaaaaab1f7400) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x0000fffff71e00cc [PAC] in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=<optimized out>) at /usr/include/c++/14/bits/std_function.h:291
#12 0x0000fffff727784c [PAC] in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0xaaaaaabc49a0, __args#0=0xaaaaab2001b0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0xfffff7381c20 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x0000fffff72023ac [PAC] in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x0000fffff73f2538 [PAC] in PythonModel::pyinit (this=0xaaaaab218290) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_4solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_v_kwargs=0xfffff7532fc0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54004
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_5solve_for (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53946
#19 0x0000fffff7acb564 [PAC] in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7ae6dcc [PAC] in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7bcef78 [PAC] in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7c00d44 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff7bf84d8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#24 0x0000fffff7c34dd8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#25 0x0000fffff7c33ab4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#26 0x0000fffff7c3382c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#27 0x0000fffff7c27620 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#28 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#29 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#30 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#31 0x0000aaaaaaaa08f0 [PAC] in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 1009aa36-6529-4d62-aa76-ee3cecebf479

Run started at  : Thu Dec 12 13:22:44 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.09e-02     0.7    0.0    0.3  144.7  -45.7
1.000e-01         16       2.66e-02     2.0    0.0    0.0   68.6   29.4
2.000e-01          1       2.08e-02     0.8    0.0    0.0   62.4   36.8
3.000e-01          1       2.08e-02     0.7    0.0    0.0   63.6   35.6
4.000e-01          1       2.09e-02     0.7    0.0    0.0   62.7   36.5
5.000e-01          1       2.12e-02     0.7    0.0    0.0   63.1   36.2
6.000e-01          2       2.11e-02     0.8    0.0    0.0   63.5   35.7
7.000e-01          1       2.09e-02     0.7    0.0    0.0   63.3   36.0
8.000e-01          1       2.11e-02     0.7    0.0    0.0   64.1   35.2
9.000e-01          1       2.14e-02     0.8    0.0    0.0   64.1   35.2
1.000e+00          1       2.14e-02     0.7    0.0    0.0   64.1   35.2
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:45 2024
Run time : 1 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff72093d4 [PAC] in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x0000fffff6fd666c [PAC] in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x0000fffff73f77f4 [PAC] in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57995
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57216
#5  0x0000fffff7c2fe78 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#6  0x0000fffff7bfbed8 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#7  0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#10 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000aaaaaaaa08f0 [PAC] in _start ()
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0xffffe518f180 (LWP 16811) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x0000fffff469d058 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x0000fffff495afe4 [PAC] in sunLoggerIsOutputRank (logger=0xaaaaab222610, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x0000fffff4956a00 [PAC] in SUNContext_Free (sunctx=0xaaaaab221e00) at /usr/src/debug/sundials-7.1.1-1.fc42.aarch64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x0000fffff71cf4d4 [PAC] in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:464
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x0000fffff71cf538 [PAC] in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x0000fffff73f5bdc [PAC] in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x0000fffff73f19fc [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54698
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0xfffff74bcba0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54659
#13 0x0000fffff7427094 [PAC] in __pyx_pf_9libboutpp_16PhysicsModelBase_10__dealloc__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54543
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_11__dealloc__ (__pyx_v_self=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54490
#15 __pyx_tp_dealloc_9libboutpp_PhysicsModelBase (o=0xfffff74bcba0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:80071
#16 0x0000fffff7ac49b4 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#17 0x0000fffff7c1f650 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#18 0x0000fffff7aef13c [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#19 0x0000fffff7c36dec [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#20 0x0000fffff7bfbfd0 [PAC] in ?? () from /lib64/libpython3.13.so.1.0
#21 0x0000fffff7c27438 [PAC] in Py_RunMain () from /lib64/libpython3.13.so.1.0
#22 0x0000fffff7bb8ca0 [PAC] in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#23 0x0000fffff78362dc [PAC] in __libc_start_call_main () from /lib64/libc.so.6
#24 0x0000fffff78363bc [PAC] in __libc_start_main_impl () from /lib64/libc.so.6
#25 0x0000aaaaaaaa08f0 [PAC] in _start ()
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16809] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
[Inferior 1 (process 16809) exited with code 016]
test.gdb:24: Error in sourced command file:
No stack.
+ :
+ PYTHONPATH=../../../../tools/pylib/:
+ python3 ./runtest
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 12 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 16813

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp 
Reading options file data/BOUT.inp
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:staggergrids = true (data/BOUT.inp)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:nx = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:ny = 1 (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option mesh:nz = 1 (data/BOUT.inp)
	Read nz from input grid file
	Grid size: 1 x 1 x 1
	Option mesh:MXG = 0 (data/BOUT.inp)
	Option mesh:MYG = 0 (data/BOUT.inp)
	Guard cells (x,y,z): 0, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 1
Variable 'ixseps2' not in mesh options. Setting to 1
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 1.000000)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=1, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 1
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 1, DIN = 0. DOUT = -1
	UXS = 1, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
No boundary regions; domain is periodic
No boundary regions in this processor
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
Variable 'dx' not in mesh options. Setting to 1.000000e+00
	Option mesh:dy = 1/n/2/pi (data/BOUT.inp)
	Option mesh:n = 1 (data/BOUT.inp)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = data (default)
	Option append = 0 (default)
	Option output:type = netcdf (default)
	Option output:path = data (user_default)
	Option output:prefix = BOUT.dmp (user_default)
	Option output:append = false (user_default)
	Option datadir = data (default)
	Option restart_files:type = netcdf (default)
	Option restart_files:path = data (user_default)
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (data/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (data/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-18 (data/BOUT.inp)
	Option solver:rtol = 1e-14 (data/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)
Setting up output (experimental output) file
	Option restart = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option datadir = data (default)
	Option stopCheckName = BOUT.stop (default)
Setting boundary for variable n
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option all:function = 0.0 (default)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option n:evolve_bndry = 0 (default)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=1, local_N=1
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: d792be00-5ed8-43b7-b5b7-5bb5652e724f

Run started at  : Thu Dec 12 13:22:46 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option datadir = data (default)
	Option optionfile = BOUT.inp (default)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       2.13e-02     0.6    0.0    0.3  144.0  -45.0
1.000e-01         16       2.74e-02     1.9    0.0    0.0   68.3   29.8
2.000e-01          1       2.10e-02     0.7    0.0    0.0   62.6   36.6
3.000e-01          1       2.12e-02     0.7    0.0    0.0   63.0   36.3
4.000e-01          1       2.12e-02     0.8    0.0    0.0   63.0   36.3
5.000e-01          1       2.13e-02     0.7    0.0    0.0   63.1   36.2
6.000e-01          2       2.14e-02     0.9    0.0    0.0   62.9   36.2
7.000e-01          1       2.10e-02     0.7    0.0    0.0   62.7   36.6
8.000e-01          1       2.13e-02     0.7    0.0    0.0   63.4   35.9
9.000e-01          1       2.12e-02     0.7    0.0    0.0   63.1   36.2
1.000e+00          1       2.15e-02     0.7    0.0    0.0   63.3   36.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Thu Dec 12 13:22:46 2024
Run time : 0 s
	Option datadir = data (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file data/BOUT.settings
	Option time_report:show = 0 (default)
*** The MPI_Comm_rank() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[459085babd5b485089dd5c24db29cbce:16813] Local abort after MPI_FINALIZE started completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
+ :
+ :
+ popd
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ make -j4 build-check
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 build-check
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 74
make  -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/DependInfo.cmake "--color="
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  0%] Creating test-fci-boundary grid file
[  0%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o
[  2%] Built target pvode
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib: /usr/bin/python3.13 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary/grid.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary/grid.fci.nc
[  4%] Built target pvpre
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Wundef -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/src/gtest-all.cc
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 43%] Built target bout++
make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d-y /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/advection /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 44%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d-y -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d-y/wave.cxx
[ 44%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/advection/advection.cxx
Making curvilinear poloidal grid
creating grid...
WARNING: Outputting 2D metrics, discarding metric information.
[ 44%] Linking CXX executable wave
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 44%] Built target test-fci-boundary-grid
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/diffusion /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/diffusion -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/diffusion/diffusion.cxx
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/MMS-wave-1d-y.dir/link.d "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 44%] Built target MMS-wave-1d-y
make  -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/spatial/fci /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/spatial/fci -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/spatial/fci/fci_mms.cxx
[ 45%] Linking CXX executable advection
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/MMS-advection.dir/link.d "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 45%] Built target MMS-advection
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d/wave.cxx
[ 45%] Linking CXX executable cyto
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1
[ 45%] Linking CXX executable fci_mms
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/MMS-diffusion.dir/link.d "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 45%] Built target MMS-diffusion
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 47%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 50%] Built target boutpp.cpython-313-aarch64-linux-gnu
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 51%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 51%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 51%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 52%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 52%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 54%] Built target test-coordinates-initialization
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 54%] Built target test-cyclic
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 55%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/MMS-spatial-fci.dir/link.d "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 55%] Built target MMS-spatial-fci
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 55%] Built target test-datafile-facade
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
[ 56%] Built target test-drift-instability
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 56%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target test-griddata
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target test-griddata-yboundary-guards
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 59%] Built target test-gyro
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 59%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 60%] Built target test-interchange-instability
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
[ 60%] Built target test-interpolate
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 62%] Built target test-interpolate-z
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
[ 62%] Built target test-invertable-operator
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
[ 63%] Built target test-invpar
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target test-laplace
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 64%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
[ 64%] Built target test-laplacexy-fv
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
[ 66%] Built target test-laplacexy-short
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 66%] Built target test-laplacexz
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
[ 67%] Built target test-multigrid-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-naulin-laplace
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
[ 68%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 68%] Built target test-petsc-laplace
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
[ 68%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-restart-io
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
[ 70%] Built target test-restarting
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
[ 71%] Built target test-smooth
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 71%] Built target test-snb
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-solver
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
[ 72%] Built target test-squash
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
[ 74%] Built target test-stopCheck
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
[ 75%] Built target test-twistshift
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 75%] Built target test-twistshift-staggered
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
[ 77%] Built target test-vec
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 77%] Built target test-yupdown
[ 78%] Building CXX object tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/get_par_bndry.cxx.o
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/get_par_bndry.cxx.o -MF CMakeFiles/test-fci-boundary.dir/get_par_bndry.cxx.o.d -o CMakeFiles/test-fci-boundary.dir/get_par_bndry.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary/get_par_bndry.cxx
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
[ 78%] Linking CXX executable wave
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target boutpp
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target build-check-integrated-tests
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary/get_par_bndry.cxx:4:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(Ind3D, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:99:53: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
   99 |     bndry_points.push_back({ind, {x, y, z}, length, valid});
      |                                                     ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx: In member function ‘void BoundaryRegionPar::add_point(int, int, int, BoutReal, BoutReal, BoutReal, BoutReal, char)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/parallel_boundary_region.hxx:103:80: warning: narrowing conversion of ‘valid’ from ‘char’ to ‘signed char’ [-Wnarrowing]
  103 |     bndry_points.push_back({xyz2ind(ix, iy, iz, localmesh), {x, y, z}, length, valid});
      |                                                                                ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary/get_par_bndry.cxx: In function ‘int main(int, char**)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary/get_par_bndry.cxx:14:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Field3D>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   14 |   for (int i = 0; i < fields.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/MMS-wave-1d.dir/link.d "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target MMS-wave-1d
[ 79%] Linking CXX shared library ../../../../../lib/libgtest.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1
[ 79%] Linking CXX executable get_par_bndry
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fci-boundary.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-fci-boundary.dir/link.d "CMakeFiles/test-fci-boundary.dir/get_par_bndry.cxx.o" -o get_par_bndry  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 79%] Built target test-fci-boundary
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 79%] Built target build-check-mms-tests
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/gtest.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.14.0 -o ../../../../../lib/libgtest.so.1.14.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o"
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.14.0 ../../../../../lib/libgtest.so.1.14.0 ../../../../../lib/libgtest.so
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 79%] Built target gtest
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 79%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Wundef -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/src/gmock-all.cc
[ 79%] Linking CXX shared library ../../../../../lib/libgmock.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/gmock.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.14.0 -o ../../../../../lib/libgmock.so.1.14.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../../../lib/libgtest.so.1.14.0
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.14.0 ../../../../../lib/libgmock.so.1.14.0 ../../../../../lib/libgmock.so
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
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make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 79%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o
[ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o
[ 79%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o
[ 79%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/field/test_field.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/field/test_field2d.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout_test_main.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/field/test_field3d.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout_test_main.cxx: In function ‘int main(int, char**)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable]
   29 |   bout::HypreLib hyprelib{};
      |                  ^~~~~~~~
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o -MF CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o.d -o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/solver/test_solverfactory.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_boutexception.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_expressionparser.cxx
[ 94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_msg_stack.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options_fields.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include/gtest/gtest-printers.h:122,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include/gtest/gtest-matchers.h:49,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include/gtest/internal/gtest-death-test-internal.h:47,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include/gtest/gtest-death-test.h:43,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include/gtest/gtest.h:64,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/test_extras.hxx:4,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options.cxx: In member function ‘virtual void OptionsTest_InvalidFormat_Test::TestBody()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options.cxx:1100:27: warning: ignoring return value of ‘std::string fmt::v11::format(format_string<T ...>, T&& ...) [with T = {Options}; std::string = std::__cxx11::basic_string<char>; format_string<T ...> = basic_format_string<char, Options>]’, declared with attribute ‘nodiscard’ [-Wunused-result]
 1100 |   EXPECT_THROW(fmt::format("{:nope}", Options{}), fmt::format_error);
      |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/fmt/core.h:5,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/coordinates.hxx:36,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/test_extras.hxx:13:
/usr/include/fmt/format.h:4363:31: note: declared here
 4363 | FMT_NODISCARD FMT_INLINE auto format(format_string<T...> fmt, T&&... args)
      |                               ^~~~~~
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_options_netcdf.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_optionsreader.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_output.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_output.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_output.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_range.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_range.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_range.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_type_name.cxx
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/bout++ -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/../../include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-aarch64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit/sys/test_utils.cxx
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   96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall  under \
      |       ^
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/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/serial_tests.dir/link.d CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../lib/libgmock.so.1.14.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.14.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target serial_tests
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-unit-tests
make  -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0
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+ SEGFAULT_SIGNALS=segv
+ make check-unit-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check-unit-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 48
make  -f CMakeFiles/Makefile2 CMakeFiles/check-unit-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googletest /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  2%] Built target gtest
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  4%] Built target pvpre
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  8%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 68%] Built target bout++
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/googletest/googlemock /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 68%] Built target gmock
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/unit /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/unit/CMakeFiles/serial_tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target serial_tests
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-unit-tests
make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
ctest -R serial_tests --output-on-failure
Test project /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi
    Start 1: serial_tests
1/1 Test #1: serial_tests .....................   Passed    5.76 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) =   5.79 sec
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target check-unit-tests
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
+ SEGFAULT_SIGNALS=segv
+ make check-mms-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check-mms-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 35
make  -f CMakeFiles/Makefile2 CMakeFiles/check-mms-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  2%] Built target pvpre
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  8%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 91%] Built target bout++
make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d-y /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target MMS-wave-1d-y
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary-grid.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-fci-boundary-grid
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build.make tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-fci-boundary/CMakeFiles/test-fci-boundary.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 97%] Built target test-fci-boundary
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/advection /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 97%] Built target MMS-advection
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/diffusion /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 97%] Built target MMS-diffusion
make  -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/spatial/fci /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target MMS-spatial-fci
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/MMS/wave-1d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target MMS-wave-1d
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-mms-tests
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
ctest -R MMS- --output-on-failure
Test project /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi
    Start 53: MMS-diffusion
1/8 Test #53: MMS-diffusion ....................   Passed   11.50 sec
    Start 54: MMS-spatial-fci
2/8 Test #54: MMS-spatial-fci ..................   Passed    9.10 sec
    Start 55: MMS-wave-1d
3/8 Test #55: MMS-wave-1d ......................   Passed    9.53 sec
    Start 56: MMS-wave-1d-y
4/8 Test #56: MMS-wave-1d-y ....................   Passed    9.62 sec
    Start 57: MMS-bracket
5/8 Test #57: MMS-bracket ......................   Passed    1.35 sec
    Start 58: MMS-derivatives3
6/8 Test #58: MMS-derivatives3 .................   Passed    1.81 sec
    Start 59: MMS-shiftedmetricinterp
7/8 Test #59: MMS-shiftedmetricinterp ..........   Passed    4.21 sec
    Start 60: MMS-upwinding3
8/8 Test #60: MMS-upwinding3 ...................   Passed    2.19 sec

100% tests passed, 0 tests failed out of 8

Total Test time (real) =  49.31 sec
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
Built target check-mms-tests
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
+ SEGFAULT_SIGNALS=segv
+ make check-integrated-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check-integrated-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 55
make  -f CMakeFiles/Makefile2 CMakeFiles/check-integrated-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  1%] Built target pvpre
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  5%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target bout++
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 60%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-aarch64-linux-gnu.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp.cpython-313-aarch64-linux-gnu
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-aarch64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-communications/CMakeFiles/test-communications.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-coordinates-initialization
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-cyclic
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-initial/CMakeFiles/test-initial.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interchange-instability
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-smooth
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-snb/CMakeFiles/test-snb.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-snb
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-solver/CMakeFiles/test-solver.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-solver
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-squash/CMakeFiles/test-squash.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-squash
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift-staggered
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-vec/CMakeFiles/test-vec.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-yupdown
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-integrated-tests
make  -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/check-integrated-tests.dir/build.make CMakeFiles/check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
ctest -R test- --output-on-failure
Test project /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi
      Start  2: test-backtrace
 1/50 Test  #2: test-backtrace ......................   Passed    0.62 sec
      Start  4: test-boutpp-collect
 !! Copr timeout => sending INT
Copr build error: Build failed